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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS04895 and DDA3937_RS04900 overlap by 4 nucleotides
DDA3937_RS04900 and DDA3937_RS04905 are separated by 158 nucleotides
DDA3937_RS04905 and DDA3937_RS04910 are separated by 2 nucleotides
DDA3937_RS04910 and DDA3937_RS04915 are separated by 110 nucleotides
DDA3937_RS04895: DDA3937_RS04895 - oxidative damage protection protein, at 1,097,487 to 1,097,759
_RS04895
DDA3937_RS04900: DDA3937_RS04900 - A/G-specific adenine glycosylase, at 1,097,756 to 1,098,847
_RS04900
DDA3937_RS04905: DDA3937_RS04905 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 1,099,006 to 1,099,722
_RS04905
DDA3937_RS04910: DDA3937_RS04910 - YggL family protein, at 1,099,725 to 1,100,069
_RS04910
DDA3937_RS04915: DDA3937_RS04915 - DUF2884 domain-containing protein, at 1,100,180 to 1,100,896
_RS04915
Group
Condition
DDA3937
_RS04895
DDA3937
_RS04900
DDA3937
_RS04905
DDA3937
_RS04910
DDA3937
_RS04915
carbon source
M9+glucose
-3.0
-0.2
-1.1
-0.8
+0.5
carbon source
M9+glucose+arginine
-1.7
-0.3
-1.3
-0.9
+0.3
plant
Upstate
-1.2
-0.2
-0.0
-0.5
-1.8
carbon source
M9+glycerol
-1.6
+0.1
-0.4
-1.4
-0.3
plant
Atlantic
-2.6
+0.3
+0.3
-0.4
-1.2
carbon source
M9+glucose+arginine
-2.0
-0.4
-0.9
+0.3
-0.3
carbon source
M9+glucose
-1.9
-0.1
-1.0
-0.1
+0.0
plant
Norland
-1.2
+0.0
-0.4
-0.2
-1.0
carbon source
M9+glucose
-1.7
-0.0
-0.9
-0.1
-0.1
carbon source
M9+glucose+arginine
-2.4
-0.0
-1.1
+0.2
+0.5
plant
Stem-Atlantic
-0.5
-0.0
-0.1
-1.3
-0.7
plant
Norland
-0.4
+0.4
-0.2
-1.7
-0.8
plant
Stem-Norland
-2.3
+0.1
+0.0
-0.0
-0.4
carbon source
M9+sucrose
-1.5
-0.0
-0.2
+0.2
-0.8
carbon source
M9+sucrose
-0.9
-0.1
-0.2
-0.8
-0.2
plant
Atlantic
-1.5
+0.2
-0.0
-0.2
-0.5
plant
Stem-Atlantic
-1.1
+0.1
-0.1
-0.9
-0.0
plant
Upstate
-0.5
-0.2
+0.2
-1.0
-0.4
plant
Stem-Norland
-2.0
+0.0
+0.3
-0.8
+0.7
plant
Atlantic
-1.7
-0.2
+0.1
+0.2
-0.1
plant
Upstate
-1.0
+0.1
+0.0
+0.3
-0.9
control
LB
-1.3
+0.0
-0.0
-0.3
+0.3
plant
Stem-Norland
-1.0
-0.2
+0.2
+0.3
-0.4
control
LB
-1.0
-0.1
-0.1
-0.4
+0.5
carbon source
M9+glycerol
-1.1
+0.1
-0.3
-0.4
+1.1
plant
Stem-Atlantic
-2.2
-0.0
+0.8
-0.6
+1.4
carbon source
M9+glycerol
-1.2
-0.0
-0.4
+0.2
+0.9
plant
Atlantic
-0.9
+0.1
-0.1
+1.1
+0.1
control
PDB
+0.3
+0.1
-0.0
+1.4
-0.7
control
PDB
-0.9
+0.2
+0.3
+1.4
+0.2
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