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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS04645 and DDA3937_RS04650 are separated by 121 nucleotides
DDA3937_RS04650 and DDA3937_RS04655 overlap by 26 nucleotides
DDA3937_RS04655 and DDA3937_RS04660 are separated by 5 nucleotides
DDA3937_RS04660 and DDA3937_RS04665 are separated by 0 nucleotides
DDA3937_RS04645: DDA3937_RS04645 - tartrate dehydrogenase, at 1,025,152 to 1,026,237
_RS04645
DDA3937_RS04650: DDA3937_RS04650 - LysR family transcriptional regulator, at 1,026,359 to 1,027,315
_RS04650
DDA3937_RS04655: DDA3937_RS04655 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 1,027,290 to 1,028,132
_RS04655
DDA3937_RS04660: DDA3937_RS04660 - queuosine precursor transporter, at 1,028,138 to 1,029,013
_RS04660
DDA3937_RS04665: DDA3937_RS04665 - helix-turn-helix transcriptional regulator, at 1,029,014 to 1,029,628
_RS04665
Group
Condition
DDA3937
_RS04645
DDA3937
_RS04650
DDA3937
_RS04655
DDA3937
_RS04660
DDA3937
_RS04665
carbon source
M9+glucose
-0.3
-0.1
-3.1
+0.3
-1.4
carbon source
M9+glucose
-0.2
-0.3
-2.4
+0.1
-1.7
carbon source
M9+glucose
-0.3
-0.2
-2.5
+0.2
-1.2
carbon source
M9+glucose+arginine
-0.2
-0.2
-2.4
+0.3
-1.0
carbon source
M9+glucose+arginine
-0.0
-0.2
-2.6
+0.3
-0.8
carbon source
M9+sucrose
-0.4
-0.0
-1.6
-0.0
-0.9
carbon source
M9+sucrose
-0.2
+0.1
-1.7
-0.0
-0.8
carbon source
M9+glucose+arginine
-0.1
-0.3
-1.4
+0.2
-1.0
carbon source
M9+starch
-0.2
-0.0
-1.3
-0.1
-0.6
carbon source
M9+starch
-0.3
-0.0
-1.2
-0.3
-0.4
control
PDB
-0.1
-0.4
-1.9
+0.2
-0.1
control
PDB
-0.6
-0.1
-1.0
-0.4
+0.1
control
PDB
-0.4
+0.6
-0.9
-0.2
+0.6
plant
Upstate
-0.3
-0.5
+0.2
-0.5
+1.3
plant
Norland
+0.3
-0.2
-0.3
-0.5
+1.1
plant
Stem-Atlantic
-0.4
-0.3
+0.5
-0.3
+1.4
plant
Norland
-0.1
-0.1
+0.4
-0.3
+1.3
plant
Atlantic
-0.4
+0.1
+0.5
-0.1
+1.2
plant
Stem-Atlantic
-0.2
-0.1
+0.9
+0.0
+1.2
plant
Stem-Norland
+0.2
-0.4
+1.0
-0.4
+1.5
plant
Stem-Atlantic
-0.1
+0.2
+0.5
+0.0
+1.3
plant
Atlantic
-0.0
-0.2
+1.1
-0.2
+1.4
plant
Stem-Norland
-0.5
+0.3
+0.9
+0.1
+1.3
plant
Atlantic
-0.2
+0.1
+0.6
-0.0
+1.9
plant
Stem-Norland
-0.1
-0.0
+1.2
-0.4
+2.0
plant
Atlantic
+0.8
-0.2
+0.7
-0.4
+2.0
plant
Stem-Atlantic
-0.8
+0.2
+1.8
+0.3
+2.3
plant
Stem-Atlantic
+0.5
-0.5
+1.5
-0.3
+2.6
plant
Stem-Norland
+0.3
-0.2
+1.5
-0.1
+2.6
plant
Stem-Norland
-0.4
+0.0
+2.0
-0.2
+2.6
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