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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS04400 and DDA3937_RS21950 are separated by 121 nucleotides
DDA3937_RS21950 and DDA3937_RS04405 are separated by 416 nucleotides
DDA3937_RS04405 and DDA3937_RS04410 are separated by 35 nucleotides
DDA3937_RS04410 and DDA3937_RS04415 are separated by 15 nucleotides
DDA3937_RS04400: DDA3937_RS04400 - glycosyltransferase, at 971,163 to 972,437
_RS04400
DDA3937_RS21950: DDA3937_RS21950 - helix-turn-helix domain-containing protein, at 972,559 to 972,846
_RS21950
DDA3937_RS04405: DDA3937_RS04405 - GNAT family N-acetyltransferase, at 973,263 to 973,676
_RS04405
DDA3937_RS04410: DDA3937_RS04410 - PAS and helix-turn-helix domain-containing protein, at 973,712 to 974,401
_RS04410
DDA3937_RS04415: DDA3937_RS04415 - cytosine permease, at 974,417 to 975,712
_RS04415
Group
Condition
DDA3937
_RS04400
DDA3937
_RS21950
DDA3937
_RS04405
DDA3937
_RS04410
DDA3937
_RS04415
stress
3.75mM_PTB
-0.6
-0.4
-0.1
-0.6
-0.1
control
PDB
-0.1
-0.8
+0.2
-0.6
-0.3
stress
1.88mM_PTB
-0.6
-0.3
-0.4
-0.2
-0.0
control
PDB
+0.3
-0.4
+0.4
-1.2
+0.2
plant
Stem-Atlantic
-0.8
+0.1
+0.4
-0.2
-0.1
carbon source
M9+glycerol
-0.6
+0.2
+0.9
-0.6
-0.1
plant
Stem-Norland
-0.2
-0.3
+0.6
-0.3
-0.1
carbon source
M9+glucose+arginine
-0.8
+0.5
+0.5
-0.1
-0.0
plant
Stem-Norland
-0.4
+0.2
+1.1
-0.6
+0.1
plant
Upstate
-0.1
+0.2
+0.8
-0.4
-0.1
carbon source
M9+glycerol
-0.1
-0.5
+0.9
+0.3
-0.1
control
PDB
+0.4
+0.5
+0.3
-0.5
-0.2
carbon source
M9+glycerol
-0.5
-0.0
+1.1
+0.2
-0.1
plant
Stem-Norland
-1.0
-0.0
+0.9
+0.9
+0.0
plant
Atlantic
+0.5
+0.1
+0.7
-0.8
+0.3
carbon source
M9+glycerol
-0.4
+0.3
+0.9
-0.1
+0.1
plant
Upstate
-0.5
+0.6
+1.2
-0.4
+0.0
plant
Norland
-0.2
+0.3
+0.9
+0.1
-0.1
plant
Norland
-0.3
+0.0
+1.1
-0.1
+0.2
plant
Norland
-0.2
+0.9
+1.0
-0.4
-0.2
plant
Stem-Norland
+0.6
-0.0
+0.7
+0.0
-0.1
carbon source
M9+glycerol
+0.5
-0.0
+1.0
-0.2
-0.0
carbon source
M9+glycerol
-0.5
+0.5
+1.4
-0.1
-0.1
plant
Atlantic
-0.8
+0.1
+1.4
+0.5
+0.1
plant
Norland
+0.3
+0.1
+0.9
+0.0
+0.2
plant
Norland
+0.0
-0.1
+1.4
+0.1
+0.0
plant
Atlantic
+0.5
+0.2
+1.3
-0.2
-0.0
plant
Atlantic
+0.9
-0.1
+1.1
-0.3
+0.0
plant
Stem-Norland
+0.9
-0.6
+1.5
+0.2
+0.1
plant
Atlantic
+0.3
+1.1
+0.9
-0.2
+0.2
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