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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS04385 and DDA3937_RS04390 overlap by 4 nucleotides
DDA3937_RS04390 and DDA3937_RS04395 are separated by 191 nucleotides
DDA3937_RS04395 and DDA3937_RS04400 are separated by 447 nucleotides
DDA3937_RS04400 and DDA3937_RS21950 are separated by 121 nucleotides
DDA3937_RS04385: DDA3937_RS04385 - insulinase family protein, at 965,486 to 968,260
_RS04385
DDA3937_RS04390: DDA3937_RS04390 - ABC transporter ATP-binding protein/permease, at 968,257 to 969,918
_RS04390
DDA3937_RS04395: DDA3937_RS04395 - RpoE-regulated lipoprotein, at 970,110 to 970,715
_RS04395
DDA3937_RS04400: DDA3937_RS04400 - glycosyltransferase, at 971,163 to 972,437
_RS04400
DDA3937_RS21950: DDA3937_RS21950 - helix-turn-helix domain-containing protein, at 972,559 to 972,846
_RS21950
Group
Condition
DDA3937
_RS04385
DDA3937
_RS04390
DDA3937
_RS04395
DDA3937
_RS04400
DDA3937
_RS21950
plant
Stem-Norland
+0.1
+0.1
-0.5
-1.0
-0.0
stress
1.88mM_PTB
+0.0
-0.2
-0.0
-0.6
-0.3
stress
3.75mM_PTB
+0.0
-0.0
+0.1
-0.6
-0.4
carbon source
M9+glycerol
+0.1
-0.0
-0.3
-0.6
+0.2
stress
7.5mM_PTB
-0.0
-0.1
+0.1
-0.7
+0.2
plant
Atlantic
+0.1
+0.3
-0.1
-0.8
+0.1
plant
Stem-Atlantic
+0.1
+0.1
+0.2
-0.8
+0.1
plant
Stem-Norland
-0.2
+0.0
+0.1
-0.4
+0.2
carbon source
M9+glycerol
+0.0
-0.1
-0.2
-0.5
+0.5
control
PDB
-0.3
+0.4
+0.7
-0.1
-0.8
carbon source
M9+starch
-0.1
+0.1
-0.3
+0.4
-0.1
carbon source
M9+glycerol
+0.0
+0.1
+0.5
-0.1
-0.5
plant
Stem-Atlantic
-0.0
+0.2
-0.4
+0.2
+0.1
plant
Upstate
-0.0
+0.0
-0.0
-0.5
+0.6
carbon source
M9+glycerol
+0.1
-0.1
+0.3
-0.4
+0.3
plant
Stem-Atlantic
-0.1
+0.1
+0.3
+0.3
-0.3
plant
Norland
-0.0
+0.2
-0.6
-0.2
+0.9
plant
Upstate
+0.2
+0.1
+0.0
+0.5
-0.4
carbon source
M9+glucose+arginine
+0.1
+0.2
+0.4
-0.8
+0.5
plant
Stem-Norland
+0.0
-0.0
+0.2
+0.9
-0.6
plant
Atlantic
-0.0
+0.1
-0.3
+0.5
+0.2
control
PDB
+0.1
+0.5
+0.2
+0.3
-0.4
plant
Atlantic
-0.3
-0.0
-0.3
+0.3
+1.1
control
PDB
+0.1
-0.2
+0.6
+0.0
+0.2
control
PDB
+0.4
+0.2
+0.3
+0.1
-0.2
plant
Atlantic
-0.4
+0.1
+0.4
+0.5
+0.1
plant
Norland
+0.1
+0.1
+0.9
-0.3
+0.0
control
PDB
+0.1
+0.1
+0.2
+0.4
+0.5
plant
Atlantic
+0.2
+0.0
+0.4
+0.9
-0.1
plant
Stem-Atlantic
+0.2
+0.3
+0.7
+0.3
+0.2
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