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Cofit
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS03825 and DDA3937_RS03830 are separated by 32 nucleotides
DDA3937_RS03830 and DDA3937_RS03840 are separated by 532 nucleotides
DDA3937_RS03840 and DDA3937_RS03845 are separated by 281 nucleotides
DDA3937_RS03845 and DDA3937_RS03850 are separated by 220 nucleotides
DDA3937_RS03825: DDA3937_RS03825 - efflux transporter outer membrane subunit, at 847,507 to 848,985
_RS03825
DDA3937_RS03830: DDA3937_RS03830 - MATE family efflux transporter, at 849,018 to 850,427
_RS03830
DDA3937_RS03840: DDA3937_RS03840 - IS3 family transposase, at 850,960 to 852,069
_RS03840
DDA3937_RS03845: DDA3937_RS03845 - hypothetical protein, at 852,351 to 853,034
_RS03845
DDA3937_RS03850: DDA3937_RS03850 - NACHT domain-containing protein, at 853,255 to 858,222
_RS03850
Group
Condition
DDA3937
_RS03825
DDA3937
_RS03830
DDA3937
_RS03840
DDA3937
_RS03845
DDA3937
_RS03850
control
PDB
+0.1
-0.1
-0.4
-0.6
-0.9
control
PDB
+0.1
+0.0
+0.1
-1.1
-0.6
control
PDB
+0.4
+0.2
-0.0
-1.0
-0.6
carbon source
M9+glycerol
+0.1
-0.3
-0.7
-0.0
-0.1
plant
Atlantic
+0.1
+0.0
-0.4
-0.3
-0.1
plant
Stem-Atlantic
+0.0
-0.3
-0.0
-0.0
-0.4
plant
Stem-Atlantic
-0.2
+0.0
+0.3
-0.5
-0.1
plant
Atlantic
-0.4
+0.1
+0.2
-0.1
-0.2
plant
Atlantic
+0.1
-0.1
-0.3
+0.2
-0.2
stress
1.88mM_PTB
+0.0
-0.1
+0.1
-0.3
-0.2
plant
Norland
+0.1
-0.3
-0.2
-0.1
+0.1
carbon source
M9+glucose+arginine
-0.2
+0.1
-0.1
+0.2
-0.2
control
PDB
+0.3
+0.1
+0.1
-0.3
-0.4
carbon source
M9+glucose
-0.1
-0.0
+0.1
+0.2
-0.3
carbon source
M9+glucose+arginine
-0.1
+0.1
+0.1
+0.1
-0.4
plant
Upstate
-0.2
-0.1
+0.2
+0.1
-0.1
plant
Stem-Norland
+0.3
+0.1
-0.3
-0.2
-0.1
plant
Stem-Norland
+0.2
-0.1
-0.4
+0.3
-0.1
control
LB
+0.2
+0.0
+0.1
-0.1
-0.3
plant
Stem-Atlantic
+0.4
-0.1
+0.2
-0.2
-0.3
control
PDB
+0.3
+0.2
+0.6
-0.7
-0.4
control
LB
+0.1
-0.0
+0.3
-0.1
-0.2
carbon source
M9+glycerol
-0.1
-0.1
+0.1
+0.4
-0.1
control
PDB
+0.3
-0.1
+0.5
-0.0
-0.5
plant
Norland
+0.2
+0.2
+0.2
-0.1
-0.3
plant
Upstate
+0.2
+0.1
+0.2
-0.3
+0.0
carbon source
M9+glucose+arginine
-0.1
+0.1
-0.2
+0.4
-0.0
plant
Atlantic
+0.4
-0.1
-0.1
+0.0
+0.1
plant
Stem-Norland
+0.2
-0.1
+0.3
+0.1
-0.2
plant
Atlantic
+0.2
+0.3
-0.0
+0.0
+0.2
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