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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS03580 and DDA3937_RS03585 are separated by 149 nucleotides
DDA3937_RS03585 and DDA3937_RS03590 are separated by 24 nucleotides
DDA3937_RS03590 and DDA3937_RS03595 are separated by 96 nucleotides
DDA3937_RS03595 and DDA3937_RS03600 are separated by 129 nucleotides
DDA3937_RS03580: DDA3937_RS03580 - hypothetical protein, at 791,741 to 792,163
_RS03580
DDA3937_RS03585: DDA3937_RS03585 - GNAT family N-acetyltransferase, at 792,313 to 792,858
_RS03585
DDA3937_RS03590: DDA3937_RS03590 - LysE family transporter, at 792,883 to 793,506
_RS03590
DDA3937_RS03595: DDA3937_RS03595 - YnfC family lipoprotein, at 793,603 to 794,328
_RS03595
DDA3937_RS03600: DDA3937_RS03600 - glycosyl hydrolase 43 family protein, at 794,458 to 796,026
_RS03600
Group
Condition
DDA3937
_RS03580
DDA3937
_RS03585
DDA3937
_RS03590
DDA3937
_RS03595
DDA3937
_RS03600
plant
Stem-Atlantic
+0.2
-1.3
+0.4
-0.1
+0.0
plant
Norland
-0.1
-0.8
-0.1
+0.2
+0.3
plant
Stem-Norland
+0.1
-0.4
-0.1
-0.3
+0.2
plant
Upstate
+0.2
-0.8
-0.1
+0.1
+0.2
plant
Stem-Atlantic
+0.2
-0.2
-0.1
-0.5
+0.2
plant
Stem-Atlantic
+0.1
-0.9
-0.0
+0.3
+0.0
control
PDB
+0.3
-0.1
-0.4
+0.1
-0.3
carbon source
M9+glucose+arginine
-0.2
-0.1
+0.1
-0.3
+0.2
plant
Atlantic
+0.4
-0.1
-0.1
-0.2
+0.0
plant
Atlantic
+0.0
-0.2
+0.1
+0.5
-0.3
carbon source
M9+glycerol
-0.1
-0.0
-0.4
+0.5
+0.1
carbon source
M9+glycerol
-0.2
+0.3
-0.2
+0.2
+0.0
plant
Atlantic
-0.4
+0.6
-0.0
+0.1
-0.2
plant
Upstate
-0.2
+0.4
+0.2
-0.0
-0.2
carbon source
M9+glycerol
-0.0
+0.2
-0.2
+0.3
-0.1
plant
Stem-Atlantic
+0.1
-0.3
+0.1
+0.1
+0.3
control
PDB
-0.1
+0.1
+0.1
-0.2
+0.4
plant
Upstate
+0.3
+0.1
+0.2
+0.0
-0.3
control
PDB
-0.4
+0.6
-0.3
+0.3
+0.3
carbon source
M9+glucose
-0.1
+0.3
+0.1
-0.1
+0.3
plant
Stem-Norland
-0.3
+0.0
+0.3
+0.2
+0.4
plant
Upstate
-0.1
-0.6
+0.3
+0.7
+0.2
carbon source
M9+glucose
-0.1
+0.5
+0.1
-0.0
+0.1
plant
Atlantic
+0.2
+0.1
-0.2
+0.2
+0.4
carbon source
M9+starch
-0.0
+0.3
+0.1
-0.0
+0.4
plant
Norland
+0.9
-0.3
+0.1
-0.2
+0.3
plant
Norland
+0.3
+0.2
+0.2
+0.0
+0.1
carbon source
M9+glycerol
-0.3
+0.5
+0.3
+0.3
+0.2
plant
Atlantic
+0.7
-0.1
-0.1
+0.4
+0.2
plant
Stem-Norland
+0.3
+0.6
+0.1
+0.3
-0.1
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