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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS03255 and DDA3937_RS03260 are separated by 188 nucleotides
DDA3937_RS03260 and DDA3937_RS03265 are separated by 69 nucleotides
DDA3937_RS03265 and DDA3937_RS03270 are separated by 208 nucleotides
DDA3937_RS03270 and DDA3937_RS03275 are separated by 72 nucleotides
DDA3937_RS03255: DDA3937_RS03255 - aminomethyl-transferring glycine dehydrogenase, at 710,961 to 713,834
_RS03255
DDA3937_RS03260: DDA3937_RS03260 - LysE family translocator, at 714,023 to 714,673
_RS03260
DDA3937_RS03265: DDA3937_RS03265 - HD domain-containing protein, at 714,743 to 715,351
_RS03265
DDA3937_RS03270: DDA3937_RS03270 - hemolysin III family protein, at 715,560 to 716,210
_RS03270
DDA3937_RS03275: DDA3937_RS03275 - tRNA-modifying protein YgfZ, at 716,283 to 717,263
_RS03275
Group
Condition
DDA3937
_RS03255
DDA3937
_RS03260
DDA3937
_RS03265
DDA3937
_RS03270
DDA3937
_RS03275
control
PDB
-0.0
-0.3
-1.4
+0.1
N.D.
control
PDB
-0.2
+0.4
-1.5
+0.1
N.D.
plant
Norland
+0.1
-0.0
-1.0
-0.1
N.D.
plant
Stem-Norland
-0.1
-0.2
-0.5
-0.0
N.D.
plant
Stem-Atlantic
-0.1
-0.6
+0.0
-0.0
N.D.
carbon source
M9+glucose
-0.3
+0.1
-0.2
-0.2
N.D.
plant
Norland
-0.2
+0.4
-0.6
-0.2
N.D.
plant
Stem-Atlantic
+0.1
+0.1
-0.9
+0.2
N.D.
plant
Stem-Norland
-0.1
+0.2
-0.5
-0.1
N.D.
plant
Upstate
+0.0
-0.4
+0.3
-0.1
N.D.
control
LB
+0.1
+0.2
-0.3
-0.1
N.D.
carbon source
M9+glucose+arginine
-0.3
-0.2
+0.6
-0.1
N.D.
control
PDB
-0.3
+0.6
+0.0
-0.3
N.D.
carbon source
M9+glucose+arginine
-0.1
+0.4
+0.0
-0.3
N.D.
carbon source
M9+glycerol
-0.2
-0.4
+0.9
-0.1
N.D.
plant
Stem-Atlantic
-0.1
+0.5
-0.3
+0.1
N.D.
carbon source
M9+sucrose
-0.3
+0.3
+0.3
-0.1
N.D.
carbon source
M9+glucose+arginine
-0.3
+0.7
+0.0
-0.1
N.D.
carbon source
M9+polygalacturonate
-0.2
+0.4
+0.3
-0.1
N.D.
carbon source
M9+polygalacturonate
-0.1
+0.5
+0.3
-0.3
N.D.
carbon source
M9+polygalacturonate
-0.1
+0.4
+0.3
-0.2
N.D.
carbon source
M9+starch
-0.1
+0.5
+0.2
-0.1
N.D.
carbon source
M9+glucose
-0.3
+0.5
+0.6
-0.3
N.D.
plant
Stem-Norland
+0.4
+0.2
+0.1
-0.1
N.D.
carbon source
M9+glucose
-0.2
+0.7
+0.5
-0.2
N.D.
plant
Norland
-0.1
+0.5
+0.7
-0.2
N.D.
plant
Norland
-0.0
+0.6
+0.1
+0.2
N.D.
plant
Upstate
-0.1
+1.1
-0.0
+0.1
N.D.
plant
Stem-Norland
+0.1
+0.3
+0.7
+0.2
N.D.
control
PDB
-0.1
+0.8
+0.8
+0.0
N.D.
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DDA3937_RS03265
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