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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS03210 and DDA3937_RS03215 are separated by 55 nucleotides
DDA3937_RS03215 and DDA3937_RS03220 are separated by 110 nucleotides
DDA3937_RS03220 and DDA3937_RS03225 are separated by 128 nucleotides
DDA3937_RS03225 and DDA3937_RS03230 are separated by 111 nucleotides
DDA3937_RS03210: DDA3937_RS03210 - tRNA-Leu, at 702,881 to 702,966
_RS03210
DDA3937_RS03215: DDA3937_RS03215 - tRNA-Leu, at 703,022 to 703,107
_RS03215
DDA3937_RS03220: DDA3937_RS03220 - DUF1435 domain-containing protein, at 703,218 to 703,502
_RS03220
DDA3937_RS03225: DDA3937_RS03225 - LysR family transcriptional regulator, at 703,631 to 704,524
_RS03225
DDA3937_RS03230: DDA3937_RS03230 - acetolactate decarboxylase, at 704,636 to 705,424
_RS03230
Group
Condition
DDA3937
_RS03210
DDA3937
_RS03215
DDA3937
_RS03220
DDA3937
_RS03225
DDA3937
_RS03230
carbon source
M9+glucose
N.D.
N.D.
-1.6
-0.0
+0.1
carbon source
M9+glucose
N.D.
N.D.
-1.1
-0.2
-0.1
plant
Stem-Atlantic
N.D.
N.D.
-1.1
-0.4
+0.1
carbon source
M9+glucose
N.D.
N.D.
-1.2
-0.2
+0.3
carbon source
M9+sucrose
N.D.
N.D.
-1.0
-0.2
+0.1
carbon source
M9+sucrose
N.D.
N.D.
-1.0
-0.2
+0.1
carbon source
M9+glucose+arginine
N.D.
N.D.
-1.0
+0.0
+0.0
carbon source
M9+sucrose
N.D.
N.D.
-0.8
-0.2
+0.0
carbon source
M9+glucose+arginine
N.D.
N.D.
-0.6
-0.1
+0.0
carbon source
M9+glucose+arginine
N.D.
N.D.
-0.6
+0.0
+0.2
control
PDB
N.D.
N.D.
-0.3
+0.4
-0.3
plant
Atlantic
N.D.
N.D.
-0.5
+0.0
+0.4
control
PDB
N.D.
N.D.
-0.3
+0.6
-0.1
plant
Upstate
N.D.
N.D.
-0.4
+0.4
+0.3
plant
Upstate
N.D.
N.D.
-0.4
+0.4
+0.5
carbon source
M9+glycerol
N.D.
N.D.
+0.7
+0.0
-0.2
carbon source
M9+glycerol
N.D.
N.D.
+0.6
+0.2
-0.2
plant
Upstate
N.D.
N.D.
+0.2
+0.4
+0.1
control
PDB
N.D.
N.D.
+0.4
+0.4
-0.1
plant
Upstate
N.D.
N.D.
-0.1
+0.7
+0.1
plant
Stem-Atlantic
N.D.
N.D.
+0.7
-0.0
+0.1
plant
Norland
N.D.
N.D.
+0.2
+0.4
+0.1
plant
Norland
N.D.
N.D.
+0.5
+0.0
+0.2
plant
Norland
N.D.
N.D.
+0.0
+0.4
+0.4
plant
Atlantic
N.D.
N.D.
+0.3
+0.3
+0.3
plant
Norland
N.D.
N.D.
+0.4
+0.3
+0.3
carbon source
M9+glycerol
N.D.
N.D.
+1.1
+0.2
-0.2
plant
Stem-Norland
N.D.
N.D.
+0.6
+0.2
+0.4
plant
Upstate
N.D.
N.D.
+0.3
+0.6
+0.4
plant
Atlantic
N.D.
N.D.
+0.5
+0.5
+0.7
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