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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS03140 and DDA3937_RS03145 are separated by 163 nucleotides
DDA3937_RS03145 and DDA3937_RS03150 are separated by 71 nucleotides
DDA3937_RS03150 and DDA3937_RS03160 are separated by 628 nucleotides
DDA3937_RS03160 and DDA3937_RS03165 are separated by 127 nucleotides
DDA3937_RS03140: DDA3937_RS03140 - thymidine phosphorylase, at 691,770 to 693,101
_RS03140
DDA3937_RS03145: DDA3937_RS03145 - phosphopentomutase, at 693,265 to 694,488
_RS03145
DDA3937_RS03150: DDA3937_RS03150 - purine-nucleoside phosphorylase, at 694,560 to 695,285
_RS03150
DDA3937_RS03160: DDA3937_RS03160 - VOC family protein, at 695,914 to 696,468
_RS03160
DDA3937_RS03165: DDA3937_RS03165 - LysR family transcriptional regulator, at 696,596 to 697,513
_RS03165
Group
Condition
DDA3937
_RS03140
DDA3937
_RS03145
DDA3937
_RS03150
DDA3937
_RS03160
DDA3937
_RS03165
carbon source
M9+glycerol
+0.2
N.D.
+0.2
-2.1
-0.0
carbon source
M9+glycerol
+0.1
N.D.
-0.3
-1.1
-0.4
plant
Stem-Norland
-0.0
N.D.
-0.5
-1.2
+0.2
plant
Stem-Norland
-0.2
N.D.
-0.4
-0.8
-0.0
plant
Stem-Atlantic
-0.1
N.D.
-0.2
-0.9
+0.0
carbon source
M9+starch
-0.2
N.D.
-0.2
-0.9
+0.1
plant
Stem-Norland
+0.1
N.D.
-0.2
-1.1
+0.2
plant
Stem-Atlantic
+0.4
N.D.
-0.3
-0.8
-0.2
plant
Stem-Atlantic
-0.1
N.D.
+0.5
-1.4
+0.2
plant
Norland
-0.6
N.D.
-0.3
+0.2
-0.1
control
LB
+0.2
N.D.
-0.6
+0.1
-0.2
plant
Stem-Norland
+0.3
N.D.
-0.1
-0.7
+0.2
control
LB
+0.4
N.D.
-0.7
-0.0
+0.0
plant
Upstate
+0.3
N.D.
-0.8
+0.3
-0.1
plant
Norland
+0.2
N.D.
-0.5
+0.3
-0.2
control
PDB
+0.5
N.D.
-0.5
+0.1
-0.1
plant
Norland
-0.3
N.D.
-0.6
+1.0
+0.1
carbon source
M9+polygalacturonate
-0.2
N.D.
-0.3
+0.6
+0.1
plant
Norland
-0.2
N.D.
-0.4
+0.9
+0.1
plant
Atlantic
+0.4
N.D.
+0.1
-0.3
+0.3
carbon source
M9+glucose
-0.0
N.D.
+0.7
-0.3
+0.1
control
PDB
-0.3
N.D.
+0.8
+0.5
-0.4
plant
Upstate
+0.2
N.D.
-0.2
+0.7
+0.0
carbon source
M9+glucose+arginine
-0.0
N.D.
+0.5
+0.4
-0.1
plant
Stem-Atlantic
+0.3
N.D.
-0.2
+0.5
+0.3
control
PDB
-0.2
N.D.
+0.3
+0.8
+0.0
control
PDB
+0.4
N.D.
-0.3
+1.0
+0.0
carbon source
M9+glucose
+0.0
N.D.
+0.4
+0.7
+0.0
carbon source
M9+glucose+arginine
+0.2
N.D.
+0.7
+0.5
+0.1
plant
Upstate
+0.1
N.D.
+0.6
+1.2
+0.1
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