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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS02815 and DDA3937_RS02820 are separated by 368 nucleotides
DDA3937_RS02820 and DDA3937_RS02825 are separated by 514 nucleotides
DDA3937_RS02825 and DDA3937_RS02830 are separated by 294 nucleotides
DDA3937_RS02830 and DDA3937_RS02835 are separated by 18 nucleotides
DDA3937_RS02815: DDA3937_RS02815 - transcriptional regulator ExuR, at 618,904 to 619,683
_RS02815
DDA3937_RS02820: DDA3937_RS02820 - MFS transporter, at 620,052 to 621,350
_RS02820
DDA3937_RS02825: DDA3937_RS02825 - glucuronate isomerase, at 621,865 to 623,283
_RS02825
DDA3937_RS02830: DDA3937_RS02830 - tagaturonate reductase, at 623,578 to 625,029
_RS02830
DDA3937_RS02835: DDA3937_RS02835 - altronate dehydratase, at 625,048 to 626,538
_RS02835
Group
Condition
DDA3937
_RS02815
DDA3937
_RS02820
DDA3937
_RS02825
DDA3937
_RS02830
DDA3937
_RS02835
carbon source
M9+polygalacturonate
-0.1
-0.7
-1.1
-0.7
-1.2
carbon source
M9+polygalacturonate
+0.1
-0.6
-0.9
-0.5
-1.1
plant
Norland
-1.8
-0.1
-0.0
-0.3
-0.7
plant
Stem-Norland
-1.1
-0.0
-0.4
-0.2
-1.1
carbon source
M9+polygalacturonate
+0.4
-0.6
-0.8
-0.6
-0.8
plant
Stem-Norland
-1.9
+0.2
+0.2
-0.6
-0.4
plant
Norland
-1.1
+0.0
-0.1
-0.3
-0.7
plant
Upstate
-0.5
+0.2
-0.1
-0.6
-1.2
control
PDB
-1.6
+0.1
+0.1
-0.4
-0.1
plant
Stem-Atlantic
-1.6
+0.2
-0.1
-0.2
-0.2
carbon source
M9+glucose+arginine
-1.0
-0.2
-0.3
-0.1
-0.1
carbon source
M9+glucose
-1.3
-0.1
-0.4
-0.2
+0.2
plant
Atlantic
-0.6
-0.1
-0.1
-0.4
-0.5
carbon source
M9+glucose+arginine
-1.3
-0.3
-0.1
-0.0
-0.1
plant
Stem-Norland
+0.1
-0.0
-0.8
-0.5
-0.3
plant
Upstate
+0.1
-0.1
-0.2
-0.6
-0.7
carbon source
M9+glucose
-1.1
-0.1
-0.4
+0.1
+0.1
plant
Atlantic
-0.2
-0.1
+0.0
-0.1
-0.9
plant
Upstate
+0.1
+0.0
-0.2
-0.3
-1.0
plant
Upstate
-0.4
+0.0
+0.2
-0.0
-1.1
carbon source
M9+glucose+arginine
-1.2
+0.0
-0.1
+0.0
+0.1
plant
Atlantic
-0.2
+0.2
-0.1
-0.2
-0.7
control
PDB
-1.1
+0.2
-0.0
-0.2
+0.2
control
PDB
-1.3
+0.0
+0.2
+0.2
+0.3
plant
Norland
+0.5
+0.1
+0.1
-0.5
-0.6
plant
Norland
+0.3
+0.8
-0.2
-0.5
-0.7
carbon source
M9+glycerol
-0.9
-0.0
-0.1
+0.0
+0.7
plant
Stem-Norland
+0.7
-0.0
+0.1
+0.1
-0.8
plant
Upstate
+1.4
-0.1
+0.3
-0.4
-1.3
plant
Atlantic
+1.9
+0.2
+0.3
-0.0
-0.8
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