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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS21810 and DDA3937_RS02455 are separated by 99 nucleotides
DDA3937_RS02455 and DDA3937_RS02460 are separated by 70 nucleotides
DDA3937_RS02460 and DDA3937_RS02465 are separated by 284 nucleotides
DDA3937_RS02465 and DDA3937_RS02470 are separated by 41 nucleotides
DDA3937_RS21810: DDA3937_RS21810 - DUF1328 domain-containing protein, at 543,891 to 544,052
_RS21810
DDA3937_RS02455: DDA3937_RS02455 - stress response protein, at 544,152 to 544,340
_RS02455
DDA3937_RS02460: DDA3937_RS02460 - TatD family hydrolase, at 544,411 to 545,253
_RS02460
DDA3937_RS02465: DDA3937_RS02465 - 4'-phosphopantetheinyl transferase superfamily protein, at 545,538 to 546,257
_RS02465
DDA3937_RS02470: DDA3937_RS02470 - SDR family NAD(P)-dependent oxidoreductase, at 546,299 to 547,063
_RS02470
Group
Condition
DDA3937
_RS21810
DDA3937
_RS02455
DDA3937
_RS02460
DDA3937
_RS02465
DDA3937
_RS02470
control
LB
-0.4
-0.6
-0.0
-0.3
+0.1
control
PDB
+0.4
-1.1
-0.1
-0.4
+0.1
plant
Stem-Atlantic
-0.2
-0.7
-0.0
+0.2
-0.1
carbon source
M9+glycerol
-0.1
-0.4
+0.2
-0.5
+0.0
plant
Stem-Atlantic
-0.1
-0.3
-0.2
+0.4
-0.4
plant
Stem-Norland
-0.3
+0.1
-0.5
+0.3
-0.0
plant
Norland
-0.8
-0.1
+0.2
+0.2
+0.1
control
PDB
+0.5
-0.6
-0.1
-0.6
+0.5
plant
Stem-Atlantic
-0.6
-0.4
-0.4
+0.9
+0.1
control
PDB
+0.0
-0.8
+0.2
+0.1
+0.6
plant
Norland
-0.2
+0.9
-0.0
-0.2
-0.4
carbon source
M9+glucose+arginine
-0.5
+0.3
-0.0
+0.2
+0.1
plant
Norland
-0.1
-0.0
+0.3
+0.4
-0.5
control
PDB
-0.2
-0.4
-0.1
+0.5
+0.4
carbon source
M9+glucose+arginine
-0.3
-0.1
+0.2
+0.2
+0.5
plant
Stem-Atlantic
+0.6
+0.0
-0.3
+0.3
-0.1
stress
1.88mM_PTB
+0.5
-0.4
+0.0
+0.1
+0.4
plant
Atlantic
+0.7
-0.2
+0.3
-0.2
+0.2
plant
Upstate
-0.5
+0.3
+0.2
+0.6
+0.2
control
PDB
-0.3
+0.6
+0.1
-0.2
+0.5
plant
Stem-Norland
-0.1
+0.9
-0.1
+0.0
+0.1
carbon source
M9+glucose
-0.3
+0.7
+0.2
-0.1
+0.4
carbon source
M9+glucose
+0.4
+0.3
+0.2
-0.1
+0.2
plant
Stem-Atlantic
-0.1
+0.7
+0.3
+0.2
+0.1
carbon source
M9+sucrose
-0.1
+0.8
+0.2
+0.4
-0.1
carbon source
M9+sucrose
-0.0
+0.4
+0.2
+0.3
+0.4
control
PDB
+0.2
+0.4
+0.1
-0.1
+0.7
carbon source
M9+glucose+arginine
-0.1
+0.4
+0.0
+0.3
+0.7
carbon source
M9+starch
+0.2
+1.0
+0.3
+0.3
-0.1
plant
Atlantic
+0.3
+1.2
+0.4
+0.4
-0.2
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DDA3937_RS02460
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