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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS01820 and DDA3937_RS01825 are separated by 4 nucleotides
DDA3937_RS01825 and DDA3937_RS01830 are separated by 130 nucleotides
DDA3937_RS01830 and DDA3937_RS01835 are separated by 128 nucleotides
DDA3937_RS01835 and DDA3937_RS01840 are separated by 49 nucleotides
DDA3937_RS01820: DDA3937_RS01820 - tol-pal system-associated acyl-CoA thioesterase, at 404,652 to 405,500
_RS01820
DDA3937_RS01825: DDA3937_RS01825 - TonB system transport protein ExbD, at 405,505 to 405,924
_RS01825
DDA3937_RS01830: DDA3937_RS01830 - Qnr family pentapeptide repeat protein, at 406,055 to 406,705
_RS01830
DDA3937_RS01835: DDA3937_RS01835 - LacI family DNA-binding transcriptional regulator, at 406,834 to 407,853
_RS01835
DDA3937_RS01840: DDA3937_RS01840 - sucrose-6-phosphate hydrolase, at 407,903 to 409,315
_RS01840
Group
Condition
DDA3937
_RS01820
DDA3937
_RS01825
DDA3937
_RS01830
DDA3937
_RS01835
DDA3937
_RS01840
plant
Stem-Norland
-3.3
N.D.
-0.0
-0.7
+0.0
plant
Stem-Norland
-3.3
N.D.
-0.1
-0.2
+0.0
plant
Stem-Atlantic
-3.0
N.D.
-0.5
+0.1
+0.1
plant
Stem-Norland
-3.4
N.D.
+0.1
-0.4
+0.4
plant
Norland
-2.4
N.D.
+0.0
-0.5
-0.3
plant
Upstate
-2.7
N.D.
+0.1
-0.5
+0.0
plant
Stem-Norland
-3.4
N.D.
+0.3
-0.1
+0.3
plant
Stem-Atlantic
-2.9
N.D.
+0.3
-0.4
+0.3
plant
Stem-Atlantic
-2.5
N.D.
+0.3
-0.5
+0.0
plant
Norland
-2.6
N.D.
-0.1
+0.2
-0.2
plant
Stem-Atlantic
-1.9
N.D.
-0.2
-0.7
+0.3
plant
Stem-Norland
-3.2
N.D.
+0.2
+0.5
+0.1
plant
Upstate
-2.9
N.D.
+0.0
+0.5
-0.1
plant
Atlantic
-2.5
N.D.
-0.1
+0.3
-0.1
plant
Atlantic
-2.7
N.D.
+0.0
+0.7
-0.3
plant
Atlantic
-2.2
N.D.
-0.1
+0.3
-0.2
carbon source
M9+glucose
-2.1
N.D.
+0.2
+0.2
-0.5
plant
Upstate
-2.4
N.D.
+0.2
+0.3
+0.0
plant
Upstate
-2.2
N.D.
+0.3
+0.4
-0.1
plant
Atlantic
-2.7
N.D.
-0.1
+1.3
-0.1
plant
Atlantic
-2.2
N.D.
-0.1
+0.6
+0.4
plant
Upstate
-2.1
N.D.
+0.4
+1.3
-0.8
carbon source
M9+glucose
-1.7
N.D.
+0.4
+0.8
-0.5
plant
Atlantic
-2.1
N.D.
+0.2
+1.0
-0.0
plant
Norland
-2.1
N.D.
+0.3
+1.0
+0.3
plant
Upstate
-1.8
N.D.
+0.0
+1.1
+0.2
control
PDB
+2.1
N.D.
-0.4
-0.6
-0.5
control
PDB
+1.3
N.D.
-0.2
+1.3
-0.0
control
PDB
+1.2
N.D.
-0.0
+1.5
-0.1
control
PDB
+2.4
N.D.
-0.3
+0.7
-0.0
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