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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS01685 and DDA3937_RS01690 are separated by 93 nucleotides
DDA3937_RS01690 and DDA3937_RS01695 are separated by 92 nucleotides
DDA3937_RS01695 and DDA3937_RS01700 are separated by 10 nucleotides
DDA3937_RS01700 and DDA3937_RS01705 are separated by 37 nucleotides
DDA3937_RS01685: DDA3937_RS01685 - monofunctional biosynthetic peptidoglycan transglycosylase, at 373,890 to 374,639
_RS01685
DDA3937_RS01690: DDA3937_RS01690 - alginate lyase family protein, at 374,733 to 376,034
_RS01690
DDA3937_RS01695: DDA3937_RS01695 - divisome-associated lipoprotein YraP, at 376,127 to 376,702
_RS01695
DDA3937_RS01700: DDA3937_RS01700 - DnaA initiator-associating protein DiaA, at 376,713 to 377,303
_RS01700
DDA3937_RS01705: DDA3937_RS01705 - YraN family protein, at 377,341 to 377,697
_RS01705
Group
Condition
DDA3937
_RS01685
DDA3937
_RS01690
DDA3937
_RS01695
DDA3937
_RS01700
DDA3937
_RS01705
plant
Stem-Norland
+0.2
+0.1
-2.1
+0.7
-1.8
plant
Stem-Atlantic
+0.5
+0.1
-1.9
+0.6
-1.7
plant
Stem-Atlantic
+0.6
-0.1
-2.1
-0.0
-0.0
plant
Norland
+0.4
-0.1
-0.8
+0.2
-1.3
plant
Stem-Atlantic
-0.1
-0.2
-1.6
+1.0
+0.0
plant
Stem-Atlantic
-0.2
-0.0
-1.7
+0.7
+0.8
plant
Upstate
-0.0
+0.1
-1.7
+1.1
+0.3
plant
Norland
+1.0
+0.2
-1.6
+1.0
-0.2
plant
Stem-Norland
+0.4
+0.0
-1.5
+0.8
+0.5
control
PDB
+0.5
+0.0
-0.6
+1.7
-0.2
plant
Atlantic
+0.3
+0.2
-0.6
+0.8
+0.8
control
PDB
+0.4
+0.2
-1.6
+2.2
+0.4
control
PDB
+1.0
+0.3
-0.0
+1.5
-0.9
carbon source
M9+glycerol
+0.6
+0.0
+2.7
+0.2
-0.6
plant
Upstate
+1.2
+0.1
-0.2
+0.5
+1.7
plant
Upstate
+0.6
-0.0
-0.2
+0.7
+2.4
control
PDB
-0.1
+0.1
+0.9
+1.9
+0.6
carbon source
M9+glucose+arginine
-0.1
+0.1
+1.5
+1.4
+0.7
carbon source
M9+glucose
+0.2
+0.0
+2.3
+1.1
-0.0
carbon source
M9+glycerol
+0.3
-0.4
+2.7
+0.6
+0.5
carbon source
M9+glucose
+0.0
-0.0
+1.9
+1.5
+0.3
carbon source
M9+glucose
+0.2
+0.2
+1.5
+1.5
+0.4
control
PDB
+1.0
+0.1
+0.9
+1.6
+0.3
carbon source
M9+glucose+arginine
+0.2
+0.0
+2.8
+1.7
-0.8
carbon source
M9+glycerol
+0.3
+0.1
+3.7
+0.5
-0.3
carbon source
M9+glucose+arginine
+0.3
+0.1
+3.2
+1.3
-0.6
carbon source
M9+glycerol
+0.4
+0.1
+3.8
+0.4
-0.1
carbon source
M9+glycerol
+0.6
+0.2
+3.6
+0.5
+0.1
control
PDB
+1.0
-0.0
+1.2
+1.7
+1.2
carbon source
M9+glycerol
+0.3
+0.1
+4.4
+0.2
+0.4
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DDA3937_RS01695
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