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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS01455 and DDA3937_RS01460 are separated by 46 nucleotides
DDA3937_RS01460 and DDA3937_RS01465 are separated by 88 nucleotides
DDA3937_RS01465 and DDA3937_RS01470 are separated by 338 nucleotides
DDA3937_RS01470 and DDA3937_RS01475 are separated by 31 nucleotides
DDA3937_RS01455: DDA3937_RS01455 - AsmA2 domain-containing protein YhdP, at 324,563 to 328,399
_RS01455
DDA3937_RS01460: DDA3937_RS01460 - metalloprotease TldD, at 328,446 to 329,891
_RS01460
DDA3937_RS01465: DDA3937_RS01465 - HTH-type transcriptional activator AaeR, at 329,980 to 330,924
_RS01465
DDA3937_RS01470: DDA3937_RS01470 - AaeX family protein, at 331,263 to 331,466
_RS01470
DDA3937_RS01475: DDA3937_RS01475 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 331,498 to 332,421
_RS01475
Group
Condition
DDA3937
_RS01455
DDA3937
_RS01460
DDA3937
_RS01465
DDA3937
_RS01470
DDA3937
_RS01475
plant
Stem-Norland
-1.6
-2.7
-0.2
+0.5
-0.1
plant
Stem-Atlantic
-0.9
-3.0
-0.3
-0.0
+0.1
plant
Stem-Norland
-1.7
-2.6
+0.2
+0.1
+0.3
plant
Stem-Atlantic
-1.1
-1.6
-0.3
-0.2
+0.1
plant
Stem-Atlantic
-1.0
-1.7
-0.1
-0.3
+0.1
plant
Stem-Norland
-1.3
-1.5
+0.3
-0.3
-0.0
plant
Stem-Norland
-1.4
-1.1
-0.1
-0.2
-0.0
plant
Stem-Atlantic
-1.2
-1.5
-0.2
+0.1
+0.0
plant
Stem-Norland
-1.5
-1.3
+0.1
+0.0
+0.1
stress
7.5mM_PTB
-1.6
-0.4
-0.2
-0.1
-0.0
plant
Stem-Atlantic
-0.8
-1.8
-0.0
+0.7
+0.1
stress
7.5mM_PTB
-0.9
-0.5
+0.0
-0.2
-0.2
plant
Atlantic
-1.0
-0.8
+0.0
+0.3
-0.1
plant
Upstate
-1.3
-0.4
+0.2
-0.0
+0.0
control
PDB
-0.4
+0.1
-0.2
-0.7
-0.3
stress
7.5mM_PTB
-1.4
-0.5
+0.0
+0.3
-0.0
control
PDB
-0.5
-0.1
-0.3
-0.2
-0.4
stress
3.75mM_PTB
-1.0
-0.6
-0.0
+0.2
-0.1
stress
3.75mM_PTB
-0.8
-0.6
-0.0
-0.1
-0.0
control
LB
-0.4
-0.4
-0.1
-0.5
-0.1
plant
Upstate
-1.1
-0.5
+0.2
+0.1
-0.1
control
PDB
-0.8
+0.2
-0.4
+0.1
-0.3
plant
Atlantic
-0.8
-0.4
+0.4
-0.5
+0.2
plant
Norland
-0.8
-0.8
-0.1
+0.6
-0.0
plant
Norland
-0.5
-0.4
+0.2
-0.3
-0.1
plant
Atlantic
-0.8
-0.4
+0.1
+0.1
+0.1
plant
Upstate
-0.9
-0.3
+0.1
+0.1
+0.1
plant
Norland
-0.5
-0.3
-0.2
+1.2
+0.1
carbon source
M9+glucose+arginine
+0.3
+0.8
-0.1
-0.4
+0.0
control
PDB
-0.2
+0.5
+0.0
+0.6
-0.3
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