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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS01310 and DDA3937_RS01315 are separated by 36 nucleotides
DDA3937_RS01315 and DDA3937_RS01320 are separated by 327 nucleotides
DDA3937_RS01320 and DDA3937_RS01325 overlap by 1 nucleotides
DDA3937_RS01325 and DDA3937_RS01330 are separated by 90 nucleotides
DDA3937_RS01310: DDA3937_RS01310 - hypothetical protein, at 295,092 to 295,301
_RS01310
DDA3937_RS01315: DDA3937_RS01315 - NAD(P)-dependent alcohol dehydrogenase, at 295,338 to 296,384
_RS01315
DDA3937_RS01320: DDA3937_RS01320 - site-specific integrase, at 296,712 to 297,932
_RS01320
DDA3937_RS01325: DDA3937_RS01325 - hypothetical protein, at 297,932 to 298,669
_RS01325
DDA3937_RS01330: DDA3937_RS01330 - AlpA family phage regulatory protein, at 298,760 to 298,984
_RS01330
Group
Condition
DDA3937
_RS01310
DDA3937
_RS01315
DDA3937
_RS01320
DDA3937
_RS01325
DDA3937
_RS01330
control
PDB
-0.4
+0.2
-0.6
-1.8
-0.1
plant
Atlantic
-0.2
-0.0
-0.1
-0.5
-0.4
plant
Norland
-0.2
-0.0
+0.1
-0.4
-0.7
control
PDB
+0.2
+0.1
-0.2
-0.3
-0.9
plant
Norland
-0.1
+0.4
-0.2
-0.4
-0.8
plant
Stem-Atlantic
-0.3
+0.0
-0.2
-0.5
-0.1
plant
Stem-Norland
+0.1
-0.4
-0.3
+0.1
-0.5
control
PDB
-0.0
+0.2
-0.4
+0.2
-0.7
stress
1.88mM_PTB
-0.3
+0.0
-0.1
-0.4
+0.3
plant
Upstate
-0.0
-0.2
+0.1
+0.3
-0.4
plant
Norland
+0.3
-0.0
+0.0
+0.2
-0.7
plant
Upstate
+0.1
+0.3
+0.2
-0.8
-0.0
carbon source
M9+glycerol
-0.7
-0.0
-0.1
+0.5
+0.2
control
PDB
-0.2
+0.1
-0.2
+0.4
-0.2
plant
Stem-Atlantic
-0.4
-0.1
-0.0
-0.1
+0.6
plant
Atlantic
+0.4
+0.0
+0.0
-0.5
+0.2
plant
Atlantic
+0.2
+0.4
+0.1
+0.0
-0.6
carbon source
M9+polygalacturonate
-0.3
-0.1
-0.1
+0.4
+0.2
stress
7.5mM_PTB
-0.2
-0.1
-0.1
+0.5
+0.1
plant
Norland
-0.1
-0.1
-0.0
+0.8
-0.3
control
LB
-0.2
+0.2
-0.1
+0.2
+0.3
carbon source
M9+glucose+arginine
+0.0
+0.1
-0.2
-0.2
+0.6
plant
Atlantic
+0.1
+0.1
+0.1
-0.4
+0.5
control
PDB
+0.2
+0.1
-0.3
+0.4
+0.1
plant
Atlantic
+0.3
+0.1
-0.1
+0.8
-0.5
plant
Stem-Norland
+0.0
-0.2
+0.2
+0.3
+0.3
carbon source
M9+glycerol
+0.1
-0.1
-0.2
+0.7
+0.4
plant
Stem-Norland
+0.1
+0.2
-0.1
+0.4
+0.3
carbon source
M9+glucose+arginine
+0.0
+0.2
-0.0
+0.9
-0.1
carbon source
M9+glycerol
-0.1
+0.2
+0.2
+1.5
+0.3
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