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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS01260 and DDA3937_RS01265 are separated by 9 nucleotides
DDA3937_RS01265 and DDA3937_RS01270 are separated by 72 nucleotides
DDA3937_RS01270 and DDA3937_RS01275 are separated by 296 nucleotides
DDA3937_RS01275 and DDA3937_RS01280 are separated by 114 nucleotides
DDA3937_RS01260: DDA3937_RS01260 - amino acid ABC transporter permease, at 285,014 to 286,108
_RS01260
DDA3937_RS01265: DDA3937_RS01265 - amino acid ABC transporter permease, at 286,118 to 287,296
_RS01265
DDA3937_RS01270: DDA3937_RS01270 - amino acid ABC transporter substrate-binding protein, at 287,369 to 288,394
_RS01270
DDA3937_RS01275: DDA3937_RS01275 - CTP synthase, at 288,691 to 289,386
_RS01275
DDA3937_RS01280: DDA3937_RS01280 - amino acid ABC transporter permease, at 289,501 to 290,166
_RS01280
Group
Condition
DDA3937
_RS01260
DDA3937
_RS01265
DDA3937
_RS01270
DDA3937
_RS01275
DDA3937
_RS01280
control
PDB
-0.5
+0.2
-0.4
-0.2
-0.6
control
PDB
-0.1
-0.2
-0.5
-0.2
+0.0
control
PDB
-0.5
-0.0
+0.1
-0.1
-0.4
plant
Stem-Norland
-0.3
+0.2
-0.3
-0.3
-0.1
control
PDB
-0.1
-0.3
-0.4
+0.4
-0.4
carbon source
M9+glycerol
+0.0
-0.4
+0.1
-0.0
-0.5
carbon source
M9+sucrose
+0.1
-0.0
-0.1
-0.4
-0.2
carbon source
M9+starch
+0.1
-0.0
-0.1
-0.2
-0.3
carbon source
M9+polygalacturonate
-0.0
+0.2
-0.2
-0.3
+0.1
plant
Atlantic
-0.2
+0.0
+0.1
-0.4
+0.2
plant
Stem-Atlantic
+0.3
-0.0
-0.3
-0.0
-0.3
plant
Atlantic
+0.1
-0.0
-0.4
-0.2
+0.4
carbon source
M9+starch
+0.2
+0.2
-0.2
-0.3
-0.0
control
PDB
+0.4
-0.3
-0.1
-0.1
-0.1
plant
Norland
+0.2
-0.2
+0.2
-0.2
-0.2
carbon source
M9+glucose+arginine
-0.0
-0.0
-0.4
-0.2
+0.5
plant
Upstate
-0.4
+0.1
+0.4
-0.1
+0.0
plant
Atlantic
+0.1
+0.0
-0.1
-0.3
+0.4
control
PDB
-0.2
-0.2
+0.0
+0.3
+0.2
plant
Stem-Atlantic
+0.1
+0.2
-0.2
+0.2
-0.3
plant
Norland
-0.2
-0.0
+0.1
+0.1
+0.3
carbon source
M9+glucose
+0.3
+0.1
+0.1
-0.4
+0.3
plant
Stem-Norland
-0.1
+0.1
+0.3
+0.5
-0.4
plant
Upstate
-0.2
+0.0
+0.2
+0.0
+0.3
plant
Stem-Atlantic
+0.1
+0.1
+0.2
+0.2
-0.2
control
LB
+0.2
-0.0
+0.1
+0.3
-0.1
plant
Stem-Norland
+0.2
+0.1
-0.1
+0.1
+0.3
plant
Norland
+0.4
+0.3
-0.1
+0.1
-0.0
plant
Norland
+0.4
+0.1
+0.1
+0.2
+0.0
plant
Stem-Atlantic
+0.2
+0.3
-0.3
+1.0
+0.3
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DDA3937_RS01270
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