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Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS01180 and DDA3937_RS01185 are separated by 103 nucleotides
DDA3937_RS01185 and DDA3937_RS01190 are separated by 55 nucleotides
DDA3937_RS01190 and DDA3937_RS01195 overlap by 1 nucleotides
DDA3937_RS01195 and DDA3937_RS01200 are separated by 91 nucleotides
DDA3937_RS01180: DDA3937_RS01180 - Rsd/AlgQ family anti-sigma factor, at 269,940 to 270,389
_RS01180
DDA3937_RS01185: DDA3937_RS01185 - NAD(+) diphosphatase, at 270,493 to 271,266
_RS01185
DDA3937_RS01190: DDA3937_RS01190 - uroporphyrinogen decarboxylase, at 271,322 to 272,395
_RS01190
DDA3937_RS01195: DDA3937_RS01195 - deoxyribonuclease V, at 272,395 to 273,069
_RS01195
DDA3937_RS01200: DDA3937_RS01200 - YjaG family protein, at 273,161 to 273,751
_RS01200
Group
Condition
DDA3937
_RS01180
DDA3937
_RS01185
DDA3937
_RS01190
DDA3937
_RS01195
DDA3937
_RS01200
carbon source
M9+glucose
-0.6
-0.2
N.D.
-0.4
-2.2
carbon source
M9+glucose
-0.5
-0.1
N.D.
-0.4
-2.0
carbon source
M9+glucose+arginine
-0.5
-0.2
N.D.
-0.3
-1.8
carbon source
M9+glucose+arginine
-0.6
-0.1
N.D.
-0.0
-1.7
carbon source
M9+glucose+arginine
-0.4
-0.1
N.D.
-0.1
-1.8
carbon source
M9+glucose
-0.2
-0.0
N.D.
-0.2
-1.7
carbon source
M9+starch
+0.1
-0.3
N.D.
-0.6
-0.4
control
LB
-0.0
-0.4
N.D.
-0.2
-0.2
carbon source
M9+polygalacturonate
-0.1
-0.2
N.D.
-0.3
-0.2
carbon source
M9+polygalacturonate
+0.0
-0.3
N.D.
-0.2
-0.2
control
LB
+0.1
-0.4
N.D.
-0.0
-0.2
plant
Stem-Norland
+0.2
+0.1
N.D.
-0.2
-0.3
plant
Stem-Norland
+0.2
-0.2
N.D.
+0.1
-0.3
plant
Stem-Atlantic
+0.0
+0.3
N.D.
-0.6
+0.2
plant
Stem-Atlantic
-0.0
+0.4
N.D.
+0.1
-0.4
plant
Upstate
+0.1
+0.2
N.D.
-0.5
+0.2
plant
Stem-Atlantic
+0.2
+0.5
N.D.
-0.4
-0.2
control
PDB
-0.1
+0.2
N.D.
+0.2
-0.3
carbon source
M9+glycerol
+0.1
-0.3
N.D.
+0.4
-0.1
plant
Stem-Norland
+0.2
+0.3
N.D.
-0.3
-0.0
control
PDB
+0.3
+0.1
N.D.
-0.3
+0.2
plant
Norland
-0.1
-0.1
N.D.
+0.4
+0.4
plant
Stem-Atlantic
+0.4
+0.5
N.D.
-0.2
-0.2
plant
Norland
-0.0
+0.6
N.D.
-0.3
+0.3
plant
Atlantic
+0.1
+0.4
N.D.
+0.2
-0.1
plant
Norland
-0.0
+0.6
N.D.
-0.1
+0.3
control
PDB
-0.1
+0.5
N.D.
+0.2
+0.3
plant
Upstate
+0.3
+0.3
N.D.
+0.0
+0.2
plant
Atlantic
+0.1
+0.3
N.D.
+0.4
+0.1
control
PDB
+0.4
+0.2
N.D.
+0.7
+0.1
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