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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS00490 and DDA3937_RS00495 are separated by 116 nucleotides
DDA3937_RS00495 and DDA3937_RS00500 are separated by 97 nucleotides
DDA3937_RS00500 and DDA3937_RS00505 are separated by 119 nucleotides
DDA3937_RS00505 and DDA3937_RS00510 are separated by 121 nucleotides
DDA3937_RS00490: DDA3937_RS00490 - hypothetical protein, at 115,562 to 115,789
_RS00490
DDA3937_RS00495: DDA3937_RS00495 - helix-turn-helix transcriptional regulator, at 115,906 to 116,178
_RS00495
DDA3937_RS00500: DDA3937_RS00500 - PLP-dependent aminotransferase family protein, at 116,276 to 117,709
_RS00500
DDA3937_RS00505: DDA3937_RS00505 - VOC family protein, at 117,829 to 118,200
_RS00505
DDA3937_RS00510: DDA3937_RS00510 - YafY family transcriptional regulator, at 118,322 to 119,023
_RS00510
Group
Condition
DDA3937
_RS00490
DDA3937
_RS00495
DDA3937
_RS00500
DDA3937
_RS00505
DDA3937
_RS00510
carbon source
M9+glycerol
-0.1
-0.7
-0.0
-0.3
-0.6
carbon source
M9+glycerol
+0.1
-0.7
-0.3
-0.3
-0.1
plant
Stem-Norland
+0.3
-0.6
+0.0
-0.3
-0.8
plant
Atlantic
+0.5
-0.9
-0.1
-0.3
-0.5
plant
Stem-Norland
+0.2
+0.4
+0.2
-0.8
-1.2
plant
Stem-Atlantic
-0.9
+0.1
+0.0
-0.2
-0.0
plant
Atlantic
-0.6
-0.2
+0.2
-0.2
-0.3
carbon source
M9+polygalacturonate
-0.3
-0.3
-0.1
-0.3
+0.1
carbon source
M9+starch
-0.5
+0.0
-0.2
-0.6
+0.4
plant
Stem-Atlantic
+0.3
-0.6
-0.3
+0.4
-0.7
plant
Stem-Atlantic
-0.1
-0.1
-0.5
+0.3
-0.4
plant
Stem-Atlantic
-0.2
-0.5
+0.1
-0.1
+0.1
carbon source
M9+glucose+arginine
-0.0
+0.3
-0.0
-0.2
-0.7
plant
Norland
-0.3
-0.4
+0.4
-0.1
-0.3
control
PDB
-0.1
+0.1
-0.3
+0.5
-0.7
control
PDB
+0.1
+0.2
+0.4
-0.1
-0.4
plant
Atlantic
-0.2
+0.5
-0.0
+0.3
-0.4
plant
Norland
-0.0
+0.2
+0.3
-0.3
+0.1
stress
3.75mM_PTB
+0.1
-0.3
+0.1
+0.2
+0.2
plant
Upstate
+0.4
+0.3
+0.1
+0.1
-0.5
plant
Norland
-0.1
-0.1
+0.3
+0.1
+0.4
control
PDB
+0.6
-0.2
-0.0
+0.2
+0.1
plant
Upstate
+0.5
-0.0
+0.0
+0.4
-0.3
carbon source
M9+glycerol
+0.0
-0.2
+0.2
+0.4
+0.2
control
PDB
+0.1
+0.5
-0.3
+0.7
-0.3
plant
Atlantic
+0.5
+0.3
+0.1
-0.2
+0.1
control
PDB
+0.8
-0.2
-0.1
-0.1
+0.7
plant
Stem-Norland
+0.4
+0.0
+0.2
+0.2
+0.4
carbon source
M9+glycerol
+0.9
+0.4
+0.1
+0.0
-0.1
control
PDB
+0.4
+0.0
+0.5
+0.2
+0.2
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