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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS00435 and DDA3937_RS00440 are separated by 674 nucleotides
DDA3937_RS00440 and DDA3937_RS00445 are separated by 159 nucleotides
DDA3937_RS00445 and DDA3937_RS00450 are separated by 12 nucleotides
DDA3937_RS00450 and DDA3937_RS00455 are separated by 105 nucleotides
DDA3937_RS00435: DDA3937_RS00435 - heat shock chaperone IbpB, at 101,307 to 101,756
_RS00435
DDA3937_RS00440: DDA3937_RS00440 - anion permease, at 102,431 to 103,843
_RS00440
DDA3937_RS00445: DDA3937_RS00445 - two-component system sensor histidine kinase DcuS, at 104,003 to 105,616
_RS00445
DDA3937_RS00450: DDA3937_RS00450 - two-component system response regulator DcuR, at 105,629 to 106,351
_RS00450
DDA3937_RS00455: DDA3937_RS00455 - 2-hydroxycarboxylate transporter family protein, at 106,457 to 107,800
_RS00455
Group
Condition
DDA3937
_RS00435
DDA3937
_RS00440
DDA3937
_RS00445
DDA3937
_RS00450
DDA3937
_RS00455
plant
Upstate
-0.1
-0.2
-0.4
-0.9
-0.3
plant
Stem-Atlantic
-0.3
-0.3
-0.5
-0.6
+0.2
plant
Norland
+0.1
-0.1
-0.6
-0.7
-0.1
plant
Upstate
+0.0
-0.1
-0.6
-0.5
-0.1
carbon source
M9+glucose+arginine
-0.2
-0.3
-0.2
-0.3
-0.2
plant
Norland
+0.2
+0.1
-0.5
-0.8
-0.1
carbon source
M9+glucose+arginine
-0.0
-0.0
-0.4
-0.6
-0.0
plant
Atlantic
-0.3
-0.1
+0.2
-0.9
+0.1
stress
7.5mM_PTB
-0.2
-0.0
-0.4
-0.2
-0.2
plant
Stem-Norland
-0.8
-0.1
-0.1
+0.1
-0.1
plant
Norland
+0.6
-0.3
-0.4
-0.6
-0.3
plant
Stem-Atlantic
-0.5
+0.3
-0.1
-0.3
-0.2
plant
Atlantic
-0.3
+0.2
-0.1
-0.7
+0.1
plant
Upstate
+0.0
-0.1
-0.2
-0.7
+0.2
plant
Upstate
+0.1
+0.1
-0.4
-0.4
-0.0
plant
Atlantic
-0.3
+0.3
-0.2
-0.7
+0.3
plant
Atlantic
-0.0
+0.2
-0.3
-0.6
+0.1
carbon source
M9+glucose+arginine
-0.0
+0.2
-0.1
-0.6
+0.0
plant
Upstate
-0.2
+0.3
-0.2
-0.4
+0.1
plant
Stem-Atlantic
-0.2
-0.3
-0.2
-0.0
+0.3
control
PDB
+0.5
-0.7
+0.0
-0.1
-0.1
plant
Atlantic
+0.4
+0.0
-0.1
-0.5
-0.0
plant
Norland
+0.1
+0.4
+0.0
-0.7
-0.0
control
PDB
-0.2
-0.2
+0.3
+0.3
-0.4
plant
Stem-Atlantic
-0.2
-0.2
+0.1
-0.1
+0.3
plant
Atlantic
+0.2
+0.3
-0.3
-0.4
+0.1
control
PDB
-0.2
-0.2
+0.7
+0.2
-0.3
plant
Stem-Norland
+0.1
+0.6
+0.2
+0.0
-0.2
plant
Stem-Norland
-0.5
-0.1
+0.5
+0.8
-0.0
plant
Stem-Atlantic
+0.5
-0.2
+0.2
+0.0
+0.3
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