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Cofit
Protein
Homologs
Fitness for 5 genes in
Caulobacter crescentus NA1000 Δfur
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500 nt
CCNA_00667 and CCNA_00668 are separated by 10 nucleotides
CCNA_00668 and CCNA_00669 overlap by 4 nucleotides
CCNA_00669 and CCNA_00670 overlap by 4 nucleotides
CCNA_00670 and CCNA_00671 are separated by 9 nucleotides
CCNA_00667: CCNA_00667 - lipopolysaccharide biosynthesis protein, at 723,506 to 724,690
_00667
CCNA_00668: CCNA_00668 - capsular polysaccharide biosynthesis protein, at 724,701 to 725,753
_00668
CCNA_00669: CCNA_00669 - glycosyltransferase family 99 protein WbsX, at 725,750 to 728,206
_00669
CCNA_00670: CCNA_00670 - ABC-type polysaccharide/polyol phosphate transport system, ATPase component, at 728,203 to 728,955
_00670
CCNA_00671: CCNA_00671 - ABC-type polysaccharide/polyol phosphate export system, permease component, at 728,965 to 729,756
_00671
Group
Condition
CCNA
_00667
CCNA
_00668
CCNA
_00669
CCNA
_00670
CCNA
_00671
stress
PYE with Dimethyl Sulfoxide 0.4 %
-1.3
-0.4
-0.4
-1.0
-1.0
no stress control
PYE no stress control
-1.6
-0.3
-0.6
-0.8
-0.6
stress
PYE with CHIR-090 4 ug/mL
-1.5
-0.4
-0.2
-1.4
-0.4
stress
PYE with CHIR-090 10 ug/mL
-1.5
-0.1
-0.1
-0.9
-0.9
no stress control
PYE no stress control
-1.5
-0.6
-0.6
-0.3
-0.5
stress
PYE with Dimethyl Sulfoxide 0.4 %
-1.4
-0.7
-0.3
-0.6
-0.4
stress
PYE with CHIR-090 40 ug/mL
-1.2
-0.4
-0.2
-0.6
-0.9
stress
PYE with CHIR-090 4 ug/mL
-1.3
-0.3
-0.5
-0.7
-0.6
stress
PYE with CHIR-090 10 ug/mL
-0.6
-0.5
-0.3
-0.5
-1.4
stress
PYE with Dimethyl Sulfoxide 0.4 vol%
-0.9
-0.5
-0.6
-0.5
-0.7
stress
PYE with CHIR-090 10 ug/mL
-1.2
-0.1
-0.5
-0.4
-0.7
no stress control
PYE no stress control
-1.1
-0.7
-0.3
-0.2
-0.6
stress
PYE with CHIR-090 4 ug/mL
-0.6
-0.4
-0.2
-0.8
-0.3
stress
PYE with CHIR-090 40 ug/mL
-1.1
-0.4
-0.3
-0.5
+0.2
stress
PYE with CHIR-090 40 ug/mL
-0.5
-0.1
-0.1
-0.6
-0.5
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