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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC62
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
citX and citG overlap by 26 nucleotides
citG and citT are separated by 50 nucleotides
citT and rna are separated by 113 nucleotides
rna and rnk are separated by 229 nucleotides
BNILDI_21850: citX - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 4,391,870 to 4,392,421
citX
BNILDI_21855: citG - triphosphoribosyl-dephospho-CoA synthase CitG, at 4,392,396 to 4,393,274
citG
BNILDI_21860: citT - citrate/succinate antiporter CitT, at 4,393,325 to 4,394,788
citT
BNILDI_21865: rna - ribonuclease I, at 4,394,902 to 4,395,708
rna
BNILDI_21870: rnk - nucleoside diphosphate kinase regulator, at 4,395,938 to 4,396,348
rnk
Group
Condition
BNILDI
_21850
BNILDI
_21855
BNILDI
_21860
BNILDI
_21865
BNILDI
_21870
citX
citG
citT
rna
rnk
phage
JK36
-0.6
-0.1
-0.1
-0.0
-0.3
carbon source
Sodium-DL-Lactate
-0.5
+0.0
+0.1
+0.0
-0.6
phage
RB68
+0.1
+0.3
-0.1
-0.4
-0.7
carbon source
L-Arabinose
-0.3
-0.1
-0.2
+0.1
-0.0
phage
Bas68
+0.1
-0.2
-0.2
+0.3
-0.4
carbon source
D-Glucose
-0.1
-0.1
+0.0
+0.0
-0.3
phage
JK38
-0.3
+0.1
-0.1
-0.1
+0.0
phage
JK36
-0.2
+0.1
-0.0
-0.0
-0.2
phage
JK38
-0.2
+0.1
-0.1
+0.2
-0.3
phage
Bas61
-0.2
+0.4
-0.1
-0.1
-0.2
carbon source
D-Glucose
-0.1
-0.0
+0.1
+0.0
+0.0
carbon source
Sodium-DL-Lactate
-0.1
+0.3
-0.0
+0.2
-0.3
carbon source
Casamino-acids
-0.1
-0.1
+0.1
+0.2
+0.2
carbon source
Casamino-acids
+0.0
+0.1
+0.2
+0.0
+0.0
carbon source
L-Arabinose
+0.2
+0.1
+0.0
+0.3
-0.1
phage
MPec2
-0.0
+0.2
-0.1
+0.1
+0.5
phage
MPec2
+0.2
+0.4
+0.0
-0.2
+0.5
phage
RB68
+0.5
+0.7
-0.0
-0.0
+0.0
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