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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC62
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500 nt
sdhD and sdhC overlap by 7 nucleotides
sdhC and ybgU are separated by 380 nucleotides
ybgU and gltA are separated by 205 nucleotides
gltA and fimA are separated by 390 nucleotides
BNILDI_21325: sdhD - succinate dehydrogenase membrane anchor subunit, at 4,289,763 to 4,290,110
sdhD
BNILDI_21330: sdhC - succinate dehydrogenase cytochrome b556 subunit, at 4,290,104 to 4,290,508
sdhC
BNILDI_21335: ybgU - Protein YbgU, at 4,290,889 to 4,290,996
ybgU
BNILDI_21340: gltA - citrate synthase, at 4,291,202 to 4,292,485
gltA
BNILDI_21345: fimA - type 1 fimbrial protein, at 4,292,876 to 4,293,442
fimA
Group
Condition
BNILDI
_21325
BNILDI
_21330
BNILDI
_21335
BNILDI
_21340
BNILDI
_21345
sdhD
sdhC
ybgU
gltA
fimA
carbon source
Sodium-DL-Lactate
-1.1
-2.0
-0.5
-3.0
-0.0
carbon source
Casamino-acids
-2.7
-1.9
+0.3
-1.1
-0.2
carbon source
Casamino-acids
-2.4
-1.4
-0.6
-0.6
-0.1
carbon source
Sodium-DL-Lactate
-0.6
-0.5
-0.2
-3.3
-0.4
phage
Bas61
-0.8
-1.9
-0.2
-0.6
+0.1
phage
JK36
-0.9
-0.9
-0.3
-0.9
-0.3
carbon source
L-Arabinose
-0.6
-0.2
-0.0
-2.2
-0.1
carbon source
D-Glucose
+0.1
+0.0
-0.2
-2.6
+0.0
phage
JK38
-0.1
-1.5
-0.4
-0.3
-0.1
carbon source
D-Glucose
+0.0
+0.1
+0.3
-2.5
-0.2
carbon source
L-Arabinose
-0.5
-0.1
+0.4
-2.2
+0.1
phage
JK38
+0.2
-1.1
+0.0
-0.4
+0.2
phage
MPec2
-0.2
-0.4
+0.4
-0.7
+0.0
phage
RB68
+0.8
-1.0
-0.2
-0.5
+0.5
phage
JK36
+0.1
-0.4
+0.5
-0.5
-0.1
phage
Bas68
-0.4
+0.2
+0.2
-0.4
+0.0
phage
RB68
+0.7
-1.0
+0.3
-0.7
+0.6
phage
MPec2
-0.2
+0.5
+0.3
-0.4
-0.3
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