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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC62
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500 nt
acnA and ybhI are separated by 182 nucleotides
ybhI and ybhH are separated by 75 nucleotides
ybhH and ybhD are separated by 183 nucleotides
ybhD and pgl are separated by 40 nucleotides
BNILDI_21080: acnA - hydratase, at 4,240,335 to 4,242,539
acnA
BNILDI_21085: ybhI - Inner membrane protein YbhI, at 4,242,722 to 4,244,155
ybhI
BNILDI_21090: ybhH - 4-oxalomesaconate tautomerase, at 4,244,231 to 4,245,283
ybhH
BNILDI_21095: ybhD - Uncharacterized HTH-type transcriptional regulator YbhD, at 4,245,467 to 4,246,420
ybhD
BNILDI_21100: pgl - 6-phosphogluconolactonase, at 4,246,461 to 4,247,456
pgl
Group
Condition
BNILDI
_21080
BNILDI
_21085
BNILDI
_21090
BNILDI
_21095
BNILDI
_21100
acnA
ybhI
ybhH
ybhD
pgl
phage
JK36
-0.0
-0.1
-0.1
-0.3
-5.0
phage
JK38
+0.0
+0.1
-0.1
-0.3
-5.1
phage
MPec2
-0.3
+0.1
-0.1
+0.0
-4.8
phage
JK38
-0.1
-0.2
+0.2
+0.2
-5.1
phage
Bas68
-0.2
+0.0
+0.2
-0.2
-4.6
phage
JK36
+0.1
+0.1
+0.2
+0.2
-4.9
phage
MPec2
+0.1
+0.4
-0.0
-0.0
-4.7
phage
RB68
+0.2
-0.0
+0.1
-0.7
-2.6
phage
RB68
+0.1
+0.4
-0.2
+1.1
-3.4
carbon source
D-Glucose
-0.0
+0.1
+0.0
-0.1
-1.1
carbon source
Sodium-DL-Lactate
-0.1
+0.0
+0.1
-0.6
-0.3
carbon source
L-Arabinose
+0.0
+0.3
+0.3
-0.9
-0.5
phage
Bas61
+0.1
-0.1
+0.1
-0.4
-0.4
carbon source
D-Glucose
+0.1
+0.2
+0.2
+0.1
-1.2
carbon source
Casamino-acids
-0.2
+0.2
-0.0
-0.3
-0.4
carbon source
L-Arabinose
-0.1
+0.3
+0.2
-0.3
-0.6
carbon source
Sodium-DL-Lactate
+0.1
+0.0
+0.3
-0.2
-0.2
carbon source
Casamino-acids
-0.0
+0.3
+0.4
-0.2
-0.3
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