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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC62
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
hlyD and lptB overlap by 8 nucleotides
lptB and ybhS overlap by 8 nucleotides
ybhS and ybhR are separated by 10 nucleotides
ybhR and ybhQ overlap by 39 nucleotides
BNILDI_20935: hlyD - secretion protein HlyD, at 4,214,369 to 4,215,364
hlyD
BNILDI_20940: lptB - LPS export ABC transporter ATP-binding protein, at 4,215,357 to 4,217,093
lptB
BNILDI_20945: ybhS - putative multidrug ABC transporter permease YbhS, at 4,217,086 to 4,218,219
ybhS
BNILDI_20950: ybhR - putative multidrug ABC transporter permease YbhR, at 4,218,230 to 4,219,336
ybhR
BNILDI_20955: ybhQ - Inner membrane protein YbhQ, at 4,219,298 to 4,219,708
ybhQ
Group
Condition
BNILDI
_20935
BNILDI
_20940
BNILDI
_20945
BNILDI
_20950
BNILDI
_20955
hlyD
lptB
ybhS
ybhR
ybhQ
carbon source
Sodium-DL-Lactate
-0.3
-0.0
-0.2
-0.1
-0.3
carbon source
Casamino-acids
-0.0
-0.1
+0.1
-0.3
-0.1
carbon source
D-Glucose
+0.0
+0.2
-0.2
-0.0
-0.4
phage
JK38
-0.2
-0.0
+0.1
-0.0
-0.1
phage
JK36
-0.5
+0.0
+0.2
+0.3
-0.2
carbon source
Sodium-DL-Lactate
+0.2
+0.0
-0.0
-0.3
-0.0
carbon source
L-Arabinose
+0.1
+0.2
-0.0
+0.1
-0.3
phage
JK38
-0.1
-0.0
-0.1
+0.5
-0.2
carbon source
D-Glucose
+0.2
+0.0
-0.0
+0.2
-0.2
phage
RB68
+0.2
-0.5
+0.4
+0.1
-0.1
phage
MPec2
-0.1
-0.0
+0.1
+0.1
+0.1
carbon source
Casamino-acids
+0.2
+0.2
-0.0
+0.1
-0.2
phage
RB68
-0.3
+0.0
+0.0
+0.3
+0.2
carbon source
L-Arabinose
+0.1
+0.2
-0.0
+0.0
-0.1
phage
Bas61
+0.0
-0.2
-0.0
+0.2
+0.4
phage
JK36
-0.1
-0.1
-0.1
+0.5
+0.3
phage
MPec2
+0.1
+0.2
-0.0
+0.1
+0.2
phage
Bas68
-0.0
+0.4
-0.0
-0.0
+0.3
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