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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC62
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500 nt
ynaN and dgcM are separated by 193 nucleotides
dgcM and smrA are separated by 20 nucleotides
smrA and lysR are separated by 329 nucleotides
lysR and abgA are separated by 175 nucleotides
BNILDI_18045: ynaN - Protein YnaN, at 3,634,450 to 3,634,497
ynaN
BNILDI_18050: dgcM - diguanylate cyclase DgcM, at 3,634,691 to 3,635,923
dgcM
BNILDI_18055: smrA - DNA endonuclease SmrA, at 3,635,944 to 3,636,507
smrA
BNILDI_18065: lysR - LysR family transcriptional regulator, at 3,636,837 to 3,637,745
lysR
BNILDI_18070: abgA - p-aminobenzoyl-glutamate hydrolase subunit AbgA, at 3,637,921 to 3,639,231
abgA
Group
Condition
BNILDI
_18045
BNILDI
_18050
BNILDI
_18055
BNILDI
_18065
BNILDI
_18070
ynaN
dgcM
smrA
lysR
abgA
carbon source
L-Arabinose
-0.7
+0.0
-0.3
+0.2
-0.0
carbon source
L-Arabinose
-0.1
-0.1
-0.1
-0.1
-0.1
phage
MPec2
+0.1
+0.0
+0.2
-0.7
-0.1
carbon source
D-Glucose
-0.2
+0.2
-0.3
-0.0
-0.1
phage
Bas61
-0.5
+0.3
-0.0
-0.0
-0.1
carbon source
Sodium-DL-Lactate
+0.2
-0.2
-0.1
-0.4
+0.0
carbon source
Sodium-DL-Lactate
-0.0
-0.2
-0.1
+0.0
-0.0
carbon source
D-Glucose
-0.4
+0.3
-0.1
+0.1
-0.2
phage
JK36
-0.9
+0.1
+0.5
-0.1
+0.1
phage
MPec2
-0.3
+0.1
+0.4
+0.1
-0.3
carbon source
Casamino-acids
-0.6
+0.3
+0.1
+0.1
+0.0
carbon source
Casamino-acids
-0.1
-0.1
-0.0
+0.2
+0.0
phage
RB68
+0.2
+0.1
+0.1
-0.7
+0.7
phage
Bas68
+0.5
+0.0
+0.2
-0.2
+0.0
phage
JK38
+0.3
+0.2
+0.2
-0.1
+0.1
phage
JK36
+0.2
+0.2
+0.3
-0.1
+0.1
phage
JK38
+0.7
+0.2
+0.1
-0.5
+0.2
phage
RB68
-0.3
+0.3
+0.4
+0.3
+0.3
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