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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC62
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
nifJ and ompN are separated by 365 nucleotides
ompN and uspF are separated by 140 nucleotides
uspF and ttcA are separated by 175 nucleotides
ttcA and dbpA are separated by 128 nucleotides
BNILDI_18000: nifJ - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 3,624,764 to 3,628,288
nifJ
BNILDI_18010: ompN - porin OmpN, at 3,628,654 to 3,629,787
ompN
BNILDI_18015: uspF - universal stress protein UspF, at 3,629,928 to 3,630,362
uspF
BNILDI_18020: ttcA - tRNA 2-thiocytidine(32) synthetase TtcA, at 3,630,538 to 3,631,473
ttcA
BNILDI_18025: dbpA - ATP-dependent RNA helicase DbpA, at 3,631,602 to 3,632,975
dbpA
Group
Condition
BNILDI
_18000
BNILDI
_18010
BNILDI
_18015
BNILDI
_18020
BNILDI
_18025
nifJ
ompN
uspF
ttcA
dbpA
carbon source
Casamino-acids
+0.0
-0.1
-0.3
-0.1
-0.7
phage
MPec2
+0.0
+0.0
+0.1
-0.2
-0.3
phage
JK38
+0.1
-0.2
-0.1
+0.1
-0.3
phage
Bas68
-0.1
-0.1
-0.0
-0.1
+0.1
phage
MPec2
-0.0
-0.1
+0.1
-0.1
-0.0
phage
JK38
-0.2
-0.1
-0.0
+0.0
+0.2
phage
JK36
+0.1
-0.1
-0.1
+0.0
-0.0
carbon source
Sodium-DL-Lactate
-0.2
-0.0
+0.1
+0.2
-0.0
carbon source
L-Arabinose
-0.1
-0.2
+0.3
-0.0
+0.0
phage
RB68
-0.1
+0.1
+0.0
+0.6
-0.5
carbon source
D-Glucose
-0.1
+0.1
+0.2
-0.0
+0.0
phage
RB68
-0.3
-0.0
-0.1
+0.1
+0.5
phage
Bas61
+0.2
-0.2
+0.3
+0.2
-0.2
carbon source
D-Glucose
-0.1
+0.2
-0.1
+0.2
+0.1
carbon source
Sodium-DL-Lactate
-0.1
+0.1
+0.2
+0.0
+0.3
phage
JK36
+0.1
-0.0
+0.2
+0.0
+0.2
carbon source
L-Arabinose
+0.0
+0.1
+0.2
+0.2
+0.0
carbon source
Casamino-acids
-0.2
+0.1
+0.5
+0.3
-0.0
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