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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC62
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500 nt
fumC and tus overlap by 4 nucleotides
tus and rstB are separated by 75 nucleotides
rstB and rstA are separated by 3 nucleotides
rstA and ydgC are separated by 128 nucleotides
BNILDI_16945: fumC - class II fumarate hydratase, at 3,394,751 to 3,396,154
fumC
BNILDI_16950: tus - DNA replication terminus site-binding protein, at 3,396,151 to 3,397,080
tus
BNILDI_16955: rstB - two-component system sensor histidine kinase RstB, at 3,397,156 to 3,398,457
rstB
BNILDI_16960: rstA - two-component system response regulator RstA, at 3,398,461 to 3,399,180
rstA
BNILDI_16965: ydgC - Inner membrane protein YdgC, at 3,399,309 to 3,399,644
ydgC
Group
Condition
BNILDI
_16945
BNILDI
_16950
BNILDI
_16955
BNILDI
_16960
BNILDI
_16965
fumC
tus
rstB
rstA
ydgC
phage
Bas68
-0.2
-0.4
+0.2
-0.1
-0.4
phage
JK36
-0.3
+0.0
+0.1
+0.1
-0.8
phage
MPec2
-0.0
-0.0
-0.1
-0.0
-0.5
carbon source
Casamino-acids
-0.1
+0.0
-0.3
-0.2
+0.2
phage
JK36
-0.3
-0.0
-0.1
+0.2
-0.1
phage
JK38
-0.0
-0.3
-0.1
-0.0
+0.3
phage
JK38
-0.1
-0.1
-0.1
+0.1
+0.1
phage
MPec2
+0.1
+0.1
-0.1
+0.2
-0.4
carbon source
D-Glucose
+0.1
-0.1
+0.1
+0.0
-0.1
carbon source
D-Glucose
-0.1
-0.0
+0.2
+0.1
-0.1
phage
Bas61
-0.1
+0.1
-0.2
+0.3
+0.1
carbon source
L-Arabinose
-0.0
+0.0
-0.1
+0.4
+0.0
phage
RB68
+0.0
+0.8
-0.2
+0.4
-0.6
carbon source
Casamino-acids
+0.5
+0.1
-0.1
-0.1
+0.2
carbon source
L-Arabinose
+0.4
-0.1
+0.1
-0.0
+0.5
carbon source
Sodium-DL-Lactate
+0.3
+0.2
+0.1
+0.2
+0.2
carbon source
Sodium-DL-Lactate
+0.1
+0.2
-0.1
+0.3
+0.7
phage
RB68
+1.1
-0.7
+0.0
+0.4
+0.5
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