Private Fitness
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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC62
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500 nt
ldtE and lpp are separated by 63 nucleotides
lpp and pykF are separated by 310 nucleotides
pykF and fumD are separated by 556 nucleotides
fumD and ydhY are separated by 455 nucleotides
BNILDI_16590: ldtE - L,D-transpeptidase LdtE, at 3,322,804 to 3,323,808
ldtE
BNILDI_16595: lpp - murein lipoprotein Lpp, at 3,323,872 to 3,324,108
lpp
BNILDI_16600: pykF - pyruvate kinase PykF, at 3,324,419 to 3,325,831
pykF
BNILDI_16605: fumD - fumarate hydratase FumD, at 3,326,388 to 3,326,597
fumD
BNILDI_16610: ydhY - ferredoxin-like protein, at 3,327,053 to 3,327,679
ydhY
Group
Condition
BNILDI
_16590
BNILDI
_16595
BNILDI
_16600
BNILDI
_16605
BNILDI
_16610
ldtE
lpp
pykF
fumD
ydhY
phage
JK38
+0.2
-2.7
-0.9
-0.6
-1.1
phage
MPec2
+0.0
-2.6
-0.8
-0.7
-0.2
phage
Bas61
-0.1
-2.5
-0.5
-0.3
-0.8
phage
MPec2
-0.2
-2.7
-0.2
-0.3
-0.4
phage
JK38
-0.2
-2.7
-0.7
-0.1
+0.3
phage
JK36
+0.2
-2.6
-0.6
-0.1
-0.2
phage
JK36
-0.2
-2.7
-0.7
-0.2
+0.7
carbon source
Casamino-acids
-0.1
-1.1
-0.7
-0.3
-0.7
carbon source
L-Arabinose
-0.1
+0.3
-1.7
-0.9
-0.6
carbon source
Sodium-DL-Lactate
+0.0
-0.6
-0.6
+0.1
-1.2
phage
Bas68
+0.1
-2.6
-0.5
+0.4
+0.4
carbon source
Sodium-DL-Lactate
-0.1
+0.1
-0.5
-0.3
-0.9
phage
RB68
-0.1
-1.3
+0.6
-0.2
-0.3
carbon source
D-Glucose
+0.0
-0.7
-0.4
-0.1
+0.3
carbon source
D-Glucose
-0.3
+0.5
-0.1
+0.1
-0.4
carbon source
L-Arabinose
+0.0
+0.7
-0.7
+0.1
-0.3
carbon source
Casamino-acids
-0.2
+0.5
+0.3
+0.1
-0.2
phage
RB68
-0.2
-1.2
+1.0
+0.5
+1.1
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