Private Fitness
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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC62
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500 nt
ptrB and exoX overlap by 4 nucleotides
exoX and yobB are separated by 23 nucleotides
yobB and holE are separated by 101 nucleotides
holE and yobA are separated by 138 nucleotides
BNILDI_15685: ptrB - oligopeptidase B, at 3,151,201 to 3,153,261
ptrB
BNILDI_15690: exoX - exodeoxyribonuclease X, at 3,153,258 to 3,153,920
exoX
BNILDI_15695: yobB - Uncharacterized protein YobB, at 3,153,944 to 3,154,600
yobB
BNILDI_15700: holE - DNA polymerase III subunit theta, at 3,154,702 to 3,154,932
holE
BNILDI_15705: yobA - CopC domain-containing protein YobA, at 3,155,071 to 3,155,445
yobA
Group
Condition
BNILDI
_15685
BNILDI
_15690
BNILDI
_15695
BNILDI
_15700
BNILDI
_15705
ptrB
exoX
yobB
holE
yobA
phage
MPec2
-0.1
-0.1
-0.8
-1.3
-1.0
carbon source
Sodium-DL-Lactate
+0.1
+0.1
-0.5
-2.2
-0.1
carbon source
Casamino-acids
+0.0
-0.0
-0.3
-0.3
-1.0
phage
RB68
+0.5
-0.5
+0.0
-1.5
+0.5
carbon source
L-Arabinose
-0.0
-0.1
-0.4
-0.9
+0.3
carbon source
D-Glucose
-0.1
+0.1
+0.0
-0.8
-0.0
phage
Bas61
+0.0
-0.0
+0.0
-1.2
+0.7
carbon source
Sodium-DL-Lactate
-0.1
+0.2
-0.1
+0.2
-0.6
carbon source
D-Glucose
-0.1
+0.3
-0.1
-0.0
-0.6
phage
JK38
-0.0
-0.1
-0.1
+0.1
-0.2
carbon source
Casamino-acids
-0.0
+0.0
+0.4
+0.3
-0.5
carbon source
L-Arabinose
-0.0
-0.0
-0.3
+0.4
+0.7
phage
MPec2
+0.1
-0.2
-0.4
+0.6
+1.0
phage
RB68
+0.6
-0.9
+0.2
+0.2
+1.6
phage
JK36
+0.0
-0.0
+0.9
+0.4
+0.8
phage
JK36
+0.1
+0.1
+0.8
+0.5
+0.6
phage
Bas68
+0.0
-0.2
-0.0
+1.2
+1.3
phage
JK38
-0.1
-0.0
+0.4
+0.8
+1.4
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