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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC62
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500 nt
yedP and yodD are separated by 297 nucleotides
yodD and dsrB are separated by 162 nucleotides
dsrB and rcsA are separated by 43 nucleotides
rcsA and fliR are separated by 289 nucleotides
BNILDI_15050: yedP - mannosyl-3-phosphoglycerate phosphatase-related protein, at 3,038,370 to 3,039,185
yedP
BNILDI_15060: yodD - YodD family peroxide/acid resistance protein, at 3,039,483 to 3,039,710
yodD
BNILDI_15065: dsrB - protein DsrB, at 3,039,873 to 3,040,061
dsrB
BNILDI_15070: rcsA - transcriptional regulator RcsA, at 3,040,105 to 3,040,728
rcsA
BNILDI_15075: fliR - flagellar type III secretion system protein FliR, at 3,041,018 to 3,041,803
fliR
Group
Condition
BNILDI
_15050
BNILDI
_15060
BNILDI
_15065
BNILDI
_15070
BNILDI
_15075
yedP
yodD
dsrB
rcsA
fliR
phage
JK38
-0.3
-3.1
+0.5
+0.4
-0.1
carbon source
Sodium-DL-Lactate
-0.1
-0.8
-0.5
-0.2
+0.4
phage
MPec2
-0.1
-1.0
+0.5
+0.0
-0.6
phage
JK36
+0.0
-1.4
+0.5
-0.3
+0.1
phage
RB68
-0.1
-1.0
-1.6
+1.8
+0.2
carbon source
L-Arabinose
+0.2
-2.0
-0.3
+1.3
-0.0
phage
JK36
-0.3
-0.6
+0.7
-0.9
+0.4
carbon source
L-Arabinose
-0.1
-0.2
-0.4
+0.4
+0.3
carbon source
Casamino-acids
-0.0
-0.3
-0.3
+0.1
+0.7
carbon source
D-Glucose
+0.1
-0.5
-0.3
+0.6
+0.4
carbon source
D-Glucose
+0.0
-1.5
+0.4
+0.8
+0.7
carbon source
Casamino-acids
-0.0
+0.2
-1.1
+0.9
+0.9
phage
MPec2
+0.2
-0.7
+0.8
+0.5
+0.2
phage
Bas68
-0.1
-0.3
+0.6
+0.3
+0.8
phage
RB68
-0.7
-0.0
+0.3
+1.5
+0.4
phage
JK38
+0.0
-0.8
+0.5
+1.1
+0.8
carbon source
Sodium-DL-Lactate
+0.0
+0.2
+0.5
+1.1
+0.2
phage
Bas61
-0.0
-0.2
+1.1
-0.1
+1.6
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