Private Fitness
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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC62
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500 nt
arnA and arnC overlap by 1 nucleotides
arnC and arnB are separated by 3 nucleotides
arnB and ais are separated by 289 nucleotides
ais and nudI are separated by 38 nucleotides
BNILDI_13525: arnA - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 2,710,620 to 2,712,602
arnA
BNILDI_13530: arnC - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 2,712,602 to 2,713,570
arnC
BNILDI_13535: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 2,713,574 to 2,714,731
arnB
BNILDI_13540: ais - Lipopolysaccharide core heptose(II)-phosphate phosphatase, at 2,715,021 to 2,715,623
ais
BNILDI_13545: nudI - nucleoside triphosphatase NudI, at 2,715,662 to 2,716,087
nudI
Group
Condition
BNILDI
_13525
BNILDI
_13530
BNILDI
_13535
BNILDI
_13540
BNILDI
_13545
arnA
arnC
arnB
ais
nudI
phage
JK38
-0.0
-0.0
-0.0
-0.4
-0.0
phage
JK32
+0.1
-0.2
+0.1
-0.3
-0.1
phage
JK32
+0.2
-0.1
+0.1
-0.0
-0.7
carbon source
Sodium-DL-Lactate
-0.2
+0.1
+0.0
-0.0
-0.3
phage
JK36
+0.0
+0.4
-0.2
-0.1
-0.4
phage
RB68
+0.6
+0.2
-0.4
-0.5
-0.1
carbon source
Sodium-DL-Lactate
-0.0
-0.0
+0.2
-0.3
-0.1
phage
RB68
+0.1
+0.5
+0.0
-1.4
+0.5
carbon source
Casamino-acids
+0.0
+0.2
+0.1
-0.2
-0.3
carbon source
Casamino-acids
-0.1
-0.3
+0.1
+0.4
-0.1
carbon source
D-Glucose
+0.0
-0.1
+0.2
-0.1
-0.0
phage
JK36
-0.1
+0.0
+0.1
-0.2
+0.1
carbon source
D-Glucose
-0.1
+0.0
+0.3
-0.3
+0.2
phage
MPec2
-0.0
+0.1
-0.1
-0.1
+0.1
phage
Bas05
+0.0
-0.0
+0.1
-0.2
+0.2
phage
MPec2
+0.1
+0.2
-0.0
-0.4
+0.2
no phage control
Control_ECRC62
-0.0
+0.1
+0.0
+0.4
-0.2
phage
JK38
+0.0
+0.2
+0.1
+0.2
-0.1
no phage control
Control_ECRC62
+0.5
+0.1
+0.1
+0.3
-0.4
carbon source
L-Arabinose
+0.2
-0.0
+0.2
+0.2
-0.0
phage
Bas68
+0.3
+0.3
+0.0
-0.1
+0.1
carbon source
L-Arabinose
-0.0
+0.2
+0.1
+0.1
+0.2
phage
Bas61
+0.0
+0.1
-0.1
+0.5
+0.3
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