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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC62
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500 nt
shoB and yfhL are separated by 193 nucleotides
yfhL and yfhH are separated by 55 nucleotides
yfhH and yfhb are separated by 208 nucleotides
yfhb and tadA are separated by 57 nucleotides
BNILDI_11915: shoB - Small toxic protein ShoB, at 2,385,500 to 2,385,580
shoB
BNILDI_11920: yfhL - 4Fe-4S dicluster ferredoxin YfhL, at 2,385,774 to 2,386,034
yfhL
BNILDI_11925: yfhH - MurR/RpiR family transcriptional regulator, at 2,386,090 to 2,386,938
yfhH
BNILDI_11930: yfhb - phosphatidylglycerophosphatase C, at 2,387,147 to 2,387,782
yfhb
BNILDI_11935: tadA - tRNA adenosine(34) deaminase TadA, at 2,387,840 to 2,388,343
tadA
Group
Condition
BNILDI
_11915
BNILDI
_11920
BNILDI
_11925
BNILDI
_11930
BNILDI
_11935
shoB
yfhL
yfhH
yfhb
tadA
phage
JK36
-0.1
-0.5
-0.3
-0.3
N.D.
phage
JK36
+0.2
-0.7
-0.2
-0.1
N.D.
phage
MPec2
+0.0
+0.1
-0.4
-0.4
N.D.
carbon source
L-Arabinose
-0.3
-0.0
+0.0
-0.3
N.D.
phage
Bas61
+0.2
-0.5
-0.2
-0.1
N.D.
phage
Bas68
-0.2
-0.5
+0.1
-0.0
N.D.
carbon source
D-Glucose
+0.2
-0.1
+0.1
-0.6
N.D.
carbon source
L-Arabinose
-0.2
-0.1
+0.3
-0.3
N.D.
phage
RB68
+0.3
+0.3
-0.6
-0.4
N.D.
carbon source
Casamino-acids
+0.1
-0.2
-0.2
+0.1
N.D.
carbon source
Sodium-DL-Lactate
+0.2
+0.1
+0.1
-0.5
N.D.
carbon source
Sodium-DL-Lactate
+0.3
-0.1
-0.1
-0.1
N.D.
phage
JK38
-0.4
+0.3
-0.0
+0.2
N.D.
phage
JK38
+0.1
-0.1
+0.2
-0.0
N.D.
carbon source
D-Glucose
+0.0
+0.4
+0.1
-0.4
N.D.
carbon source
Casamino-acids
+0.4
+0.0
-0.0
-0.2
N.D.
phage
MPec2
-0.4
+0.3
+0.2
+0.2
N.D.
phage
RB68
+0.2
+0.1
+0.2
-0.1
N.D.
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