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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC62
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500 nt
hpaD and hpaE are separated by 1 nucleotides
hpaE and hpaG overlap by 4 nucleotides
hpaG and hpaR are separated by 271 nucleotides
hpaR and tsr are separated by 118 nucleotides
BNILDI_07875: hpaD - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 1,574,386 to 1,575,237
hpaD
BNILDI_07880: hpaE - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 1,575,239 to 1,576,705
hpaE
BNILDI_07885: hpaG - 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, at 1,576,702 to 1,577,991
hpaG
BNILDI_07890: hpaR - homoprotocatechuate degradation operon regulator HpaR, at 1,578,263 to 1,578,709
hpaR
BNILDI_07895: tsr - methyl-accepting chemotaxis protein, at 1,578,828 to 1,580,492
tsr
Group
Condition
BNILDI
_07875
BNILDI
_07880
BNILDI
_07885
BNILDI
_07890
BNILDI
_07895
hpaD
hpaE
hpaG
hpaR
tsr
phage
RB68
+0.2
-0.2
-0.4
-0.5
-0.6
phage
JK38
-0.1
-0.2
-0.1
-0.4
-0.2
carbon source
D-Glucose
-0.0
-0.5
-0.0
-0.1
-0.3
carbon source
Sodium-DL-Lactate
-0.1
-0.2
-0.1
-0.4
-0.1
carbon source
Sodium-DL-Lactate
-0.0
-0.1
-0.2
-0.3
-0.0
carbon source
Casamino-acids
-0.1
-0.0
-0.2
+0.2
-0.2
phage
RB68
+0.1
-0.2
+0.1
-0.2
-0.2
phage
JK36
-0.0
+0.1
-0.1
-0.4
+0.1
carbon source
Casamino-acids
+0.1
-0.2
-0.1
+0.1
-0.1
phage
MPec2
+0.0
-0.3
+0.1
-0.1
-0.0
phage
MPec2
+0.1
+0.0
-0.1
-0.3
+0.1
phage
Bas61
-0.0
+0.0
-0.1
-0.1
+0.0
carbon source
D-Glucose
+0.0
+0.3
-0.3
-0.2
+0.0
phage
JK36
+0.0
-0.1
-0.1
-0.0
+0.2
carbon source
L-Arabinose
-0.1
-0.4
+0.1
+0.3
+0.1
carbon source
L-Arabinose
+0.0
+0.1
-0.0
-0.2
+0.2
phage
JK38
-0.1
+0.2
+0.0
-0.3
+0.3
phage
Bas68
+0.2
+0.2
+0.2
-0.1
-0.2
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