Private Fitness
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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC62
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500 nt
garP and garD are separated by 374 nucleotides
garD and prlF are separated by 148 nucleotides
prlF and yhaV overlap by 1 nucleotides
yhaV and agaR are separated by 54 nucleotides
BNILDI_01390: garP - galactarate/glucarate/glycerate transporter GarP, at 274,593 to 275,927
garP
BNILDI_01395: garD - galactarate dehydratase, at 276,302 to 277,873
garD
BNILDI_01400: prlF - type II toxin-antitoxin system antitoxin PrlF, at 278,022 to 278,357
prlF
BNILDI_01405: yhaV - type II toxin-antitoxin system ribonuclease toxin YhaV, at 278,357 to 278,821
yhaV
BNILDI_01410: agaR - aga operon transcriptional regulator AgaR, at 278,876 to 279,685
agaR
Group
Condition
BNILDI
_01390
BNILDI
_01395
BNILDI
_01400
BNILDI
_01405
BNILDI
_01410
garP
garD
prlF
yhaV
agaR
carbon source
Casamino-acids
-0.1
+0.1
-2.7
+0.3
+0.2
phage
MPec2
+0.0
+0.0
-0.5
+0.3
-0.6
phage
JK36
-0.2
+0.2
-0.3
+0.1
-0.5
carbon source
D-Glucose
-0.0
+0.2
-0.5
-0.1
-0.2
carbon source
L-Arabinose
-0.0
+0.2
-0.7
+0.0
+0.1
phage
RB68
-0.1
+0.3
-1.0
+0.7
-0.3
phage
JK36
-0.3
+0.1
+0.2
+0.3
-0.6
phage
MPec2
+0.2
-0.0
-0.3
+0.2
-0.3
phage
JK38
+0.1
+0.4
-0.3
+0.2
-0.6
carbon source
Sodium-DL-Lactate
+0.0
+0.0
+0.2
-0.2
-0.3
carbon source
Casamino-acids
-0.0
+0.2
-0.8
+0.2
+0.2
phage
Bas68
-0.2
-0.2
+0.2
+0.4
-0.3
carbon source
Sodium-DL-Lactate
+0.1
-0.1
-0.3
+0.5
-0.2
phage
JK38
+0.1
+0.1
+0.2
+0.5
-0.7
carbon source
L-Arabinose
+0.2
-0.1
+0.3
-0.2
+0.1
carbon source
D-Glucose
-0.0
+0.1
-0.0
+0.3
+0.1
phage
Bas61
+0.1
+0.1
+0.4
+0.4
-0.5
phage
RB68
+0.3
+0.5
+0.6
+1.2
-0.6
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