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Cofit
Protein
Homologs
Fitness for 5 genes in
Bacteroides ovatus ATCC 8483
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BACOVA_03897 and BACOVA_03898 are separated by 60 nucleotides
BACOVA_03898 and BACOVA_03899 overlap by 32 nucleotides
BACOVA_03899 and BACOVA_03900 are separated by 111 nucleotides
BACOVA_03900 and BACOVA_03901 are separated by 48 nucleotides
BACOVA_03897: BACOVA_03897 - hypothetical protein, at 237,998 to 238,249
_03897
BACOVA_03898: BACOVA_03898 - hypothetical protein, at 238,310 to 238,966
_03898
BACOVA_03899: BACOVA_03899 - hypothetical protein, at 238,935 to 239,687
_03899
BACOVA_03900: BACOVA_03900 - hypothetical protein, at 239,799 to 240,374
_03900
BACOVA_03901: BACOVA_03901 - hypothetical protein, at 240,423 to 241,070
_03901
Group
Condition
BACOVA
_03897
BACOVA
_03898
BACOVA
_03899
BACOVA
_03900
BACOVA
_03901
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
-1.2
-0.1
+0.0
+0.4
-0.3
carbon source
Pullulan 2.5 mg/mL (C)
-0.7
-1.3
+0.5
+0.1
+0.3
carbon source
b-Glucan from Oat 2.5 mg/mL (C)
-0.1
-0.5
+0.6
+0.1
-0.8
carbon source
amylopectin from maize 2.5 mg/mL (C)
-0.7
-0.0
+0.4
-0.1
-0.2
carbon source complex media
Peptone 2.5 mg/mL (C) complex media
-0.4
+0.0
+0.4
-0.1
-0.4
carbon source
b-glucan from Barley 2.5 mg/ml (C)
-0.5
-0.4
+0.3
+0.5
-0.3
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
-0.4
+0.1
+0.1
+0.3
-0.5
carbon source
D-Glucosamine Hydrochloride 10 mM (C)
-0.1
+0.4
+0.2
+0.5
-1.1
carbon source
Tara gum 2.5 mg/ml (C)
-0.6
+0.3
+0.2
-0.0
+0.1
carbon source
b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
+0.2
-0.1
+0.4
-0.3
-0.1
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
-0.6
+0.1
-0.0
+0.6
+0.1
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
+0.3
+0.0
+0.2
+0.4
-0.7
carbon source
Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
-0.2
+0.1
+0.4
+0.3
-0.3
carbon source
Pectin from apple; filtered 1 mg/ml (C)
-0.3
+0.4
+0.3
+0.1
-0.2
carbon source
Amylopectin from Potato 2.5 mg/mL (C)
-0.7
-0.1
+0.5
+0.2
+0.5
carbon source
Amylopectin from Potato 2.5 mg/mL (C)
+0.2
-0.4
+0.4
+0.3
-0.2
carbon source
D-Galactose 10 mM (C)
+0.2
-0.2
+0.2
+0.5
-0.2
carbon source
Dextran, Mw ~200,000 2.5 mg/ml (C)
-0.8
+0.1
+0.6
+0.3
+0.3
carbon source
D-Galactose 10 mM (C)
-0.4
+0.4
+0.0
+0.2
+0.2
carbon source
Laminarin from Laminaria digitata 2.5 mg/mL (C)
+0.3
-0.3
+0.3
+0.2
+0.2
carbon source
Dextran, Mw ~200,000 2.5 mg/mL (C)
+0.4
-0.2
+0.5
+0.3
-0.2
carbon source
D-Arabinose 10 mM (C)
-0.3
+0.3
-0.0
+0.7
+0.2
carbon source
Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
+0.1
-0.4
+0.7
+0.5
-0.1
carbon source
b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)
-0.1
+0.6
+0.6
-0.1
+0.0
carbon source
Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
+0.3
-0.5
+0.8
+0.4
-0.0
carbon source
amylopectin from maize 2.5 mg/ml (C)
+0.3
-0.3
+0.4
+0.1
+0.5
carbon source
Mucin from porcine stomach type III 2.5 mg/mL (C)
-0.1
+0.3
+0.4
+0.5
+0.0
carbon source
B-glucan from yeast 2.5 mg/ml (C)
+0.0
+0.1
+0.7
+0.5
-0.1
carbon source
D-Arabinose 10 mM (C)
-0.3
-0.0
+0.9
+0.9
-0.1
carbon source
Pustulan (b-1-6 glucan) 2.5 mg/mL (C)
+0.1
+0.1
+0.3
+0.6
+0.4
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