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Cofit
Protein
Homologs
Fitness for 5 genes in
Bacteroides ovatus ATCC 8483
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BACOVA_01557 and BACOVA_01558 overlap by 8 nucleotides
BACOVA_01558 and BACOVA_01559 are separated by 51 nucleotides
BACOVA_01559 and BACOVA_01560 are separated by 267 nucleotides
BACOVA_01560 and BACOVA_01561 are separated by 82 nucleotides
BACOVA_01557: BACOVA_01557 - hypothetical protein, at 59,142 to 59,834
_01557
BACOVA_01558: BACOVA_01558 - hypothetical protein, at 59,827 to 60,549
_01558
BACOVA_01559: BACOVA_01559 - DNA mismatch endonuclease Vsr, at 60,601 to 61,113
_01559
BACOVA_01560: BACOVA_01560 - hypothetical protein, at 61,381 to 61,491
_01560
BACOVA_01561: BACOVA_01561 - zinc finger/helix-turn-helix protein, YgiT family, at 61,574 to 62,569
_01561
Group
Condition
BACOVA
_01557
BACOVA
_01558
BACOVA
_01559
BACOVA
_01560
BACOVA
_01561
carbon source
b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
+0.1
+0.3
+0.0
-0.4
-6.3
carbon source
D-Arabinose 10 mM (C)
-0.3
-0.2
-0.2
-1.1
-3.9
carbon source
Galactomannan from guar 2.5 mg/mL (C)
+0.1
-0.1
-0.2
-0.7
-4.5
carbon source
Wheat Arabinoxylan 2.5 mg/mL (C)
+0.0
-0.1
-0.0
-1.2
-3.8
carbon source
Pustulan (b-1-6 glucan) 2.5 mg/mL (C)
-0.3
-0.5
+0.2
-0.3
-4.3
carbon source
Glucomannan (konjac) 2.5 mg/ml (C)
-0.1
-0.1
+0.1
-0.9
-4.0
carbon source
Wheat Arabinoxylan; filtered 1 mg/mL (C)
+0.0
-0.1
-0.0
-0.5
-4.2
carbon source
Wheat Arabinoxylan 2.5 mg/mL (C)
-0.0
-0.2
+0.2
-0.9
-3.9
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
+0.0
+0.1
+0.3
-0.5
-4.6
carbon source
Glycogen from bovine liver 2.5 mg/mL (C)
-0.0
+0.2
+0.0
-0.5
-4.1
carbon source
Tara gum 2.5 mg/ml (C)
-0.1
-0.3
-0.0
-0.9
-3.1
carbon source
Wheat Arabinoxylan; filtered 1 mg/ml (C)
-0.2
-0.2
+0.0
-0.2
-3.5
carbon source
Galactomannan from guar 2.5 mg/mL (C)
+0.1
-0.1
+0.3
-0.4
-3.9
carbon source
B-glucan from yeast 2.5 mg/mL (C)
-0.0
+0.2
+0.1
-0.6
-3.7
carbon source
Glucomannan (konjac) 2.5 mg/mL (C)
+0.3
+0.1
+0.3
-1.1
-3.4
carbon source
Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
+0.1
-0.2
+0.1
-0.0
-3.8
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
+0.2
+0.2
+0.0
-0.4
-3.8
carbon source
D-Glucose 10 mM (C)
-0.2
-0.3
+0.2
-0.1
-3.4
carbon source
b-glucan from Barley 2.5 mg/ml (C)
+0.2
+0.0
+0.4
-0.2
-4.1
carbon source
b-Glucan from Oat 2.5 mg/mL (C)
-0.0
-0.1
+0.3
-0.5
-3.4
carbon source
Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
-0.1
-0.2
+0.3
-0.3
-3.4
carbon source
Tara gum 2.5 mg/mL (C)
+0.1
-0.0
+0.2
-0.8
-3.1
carbon source
Amylopectin from Potato 2.5 mg/mL (C)
-0.0
+0.3
+0.2
-0.7
-3.4
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
+0.1
+0.2
+0.1
-0.5
-3.3
carbon source
b-Glucan from Oat 2.5 mg/ml (C)
+0.2
-0.1
+0.2
-0.2
-3.5
carbon source
Dextran, Mw ~200,000 2.5 mg/ml (C)
+0.2
+0.0
+0.3
-0.1
-3.5
carbon source
Amylopectin from Potato 2.5 mg/mL (C)
+0.1
+0.4
+0.2
-0.3
-3.3
carbon source
amylopectin from maize 2.5 mg/mL (C)
+0.3
+0.1
+0.4
+0.1
-3.7
carbon source
Pectin from citrus peel; filtered 1 mg/ml (C)
+0.4
+0.2
+0.5
+0.1
-3.9
carbon source
amylopectin from maize 2.5 mg/ml (C)
+0.2
-0.0
+0.7
+1.2
-2.8
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