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Cofit
Protein
Homologs
Fitness for 5 genes in
Bacteroides ovatus ATCC 8483
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BACOVA_00581 and BACOVA_00582 are separated by 126 nucleotides
BACOVA_00582 and BACOVA_00583 are separated by 4 nucleotides
BACOVA_00583 and BACOVA_00584 overlap by 17 nucleotides
BACOVA_00584 and BACOVA_00585 are separated by 10 nucleotides
BACOVA_00581: BACOVA_00581 - hypothetical protein, at 15,194 to 15,700
_00581
BACOVA_00582: BACOVA_00582 - hypothetical protein, at 15,827 to 18,085
_00582
BACOVA_00583: BACOVA_00583 - RNA polymerase sigma factor, sigma-70 family, at 18,090 to 18,662
_00583
BACOVA_00584: BACOVA_00584 - RyR domain protein, at 18,646 to 19,734
_00584
BACOVA_00585: BACOVA_00585 - RyR domain protein, at 19,745 to 20,050
_00585
Group
Condition
BACOVA
_00581
BACOVA
_00582
BACOVA
_00583
BACOVA
_00584
BACOVA
_00585
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
+0.3
+0.1
-0.0
-0.6
-2.1
carbon source
Pustulan (b-1-6 glucan) 2.5 mg/mL (C)
-0.3
+0.0
+0.2
-0.3
-1.4
carbon source
b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
+0.1
+0.1
-0.4
-0.5
-1.0
carbon source
D-Glucosamine Hydrochloride 10 mM (C)
+0.1
-0.0
+0.2
-0.1
-1.9
carbon source
amylopectin from maize 2.5 mg/mL (C)
+0.4
+0.3
-0.1
-0.3
-2.0
carbon source
Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
+0.0
-0.1
-0.0
-0.1
-1.5
carbon source
B-glucan from yeast 2.5 mg/mL (C)
+0.2
+0.0
-0.3
-0.5
-1.0
carbon source
D-Galactose 10 mM (C)
-0.1
-0.1
+0.1
-0.3
-1.0
carbon source
Arabinoxylan (Rye Flour) 0.5 mg/mL (C)
+0.1
+0.1
-0.3
-0.4
-0.8
carbon source
b-Mannan borohydrate reduced carob seed 2.5 mg/ml (C)
+0.3
+0.0
+0.1
-1.1
-0.5
carbon source
Tara gum 2.5 mg/ml (C)
+0.0
+0.2
+0.2
-0.2
-1.4
carbon source
Amylopectin from Potato 2.5 mg/mL (C)
+0.8
+0.3
-0.1
-0.8
-1.2
carbon source
Laminarin from Laminaria digitata 2.5 mg/mL (C)
+0.1
+0.3
-0.0
-0.0
-1.3
carbon source
Dextran, Mw ~200,000 2.5 mg/mL (C)
+0.3
+0.0
+0.0
-0.3
-0.9
carbon source
polygalacturonic 2.5 mg/ml (C)
-0.0
+0.1
+0.2
+0.0
-1.0
carbon source
b-Glucan from Oat 2.5 mg/mL (C)
+0.4
+0.4
-0.2
-0.0
-1.1
carbon source
beta-Cyclodextrin 2.5 mg/mL (C)
+0.4
+0.2
-0.1
-0.1
-0.7
carbon source
a-Cyclodextrin 2.5 mg/mL (C)
+0.3
+0.4
+0.0
-0.3
-0.6
carbon source
B-glucan from yeast 2.5 mg/ml (C)
-0.1
-0.1
+0.3
-0.6
+0.5
carbon source
Pullulan 2.5 mg/mL (C)
+0.7
-0.3
+0.5
+0.1
-1.0
carbon source
Amylopectin from Potato 2.5 mg/mL (C)
+0.1
+0.1
+0.4
-0.6
+0.0
carbon source complex media
RCM 1 x (C) complex media
-0.0
+0.1
-0.0
-0.5
+0.9
carbon source
Dextran, Mw ~200,000 2.5 mg/ml (C)
+0.4
+0.2
+0.0
-0.4
+0.3
carbon source
Hyaluronic from Streptococcus equi 2.5 mg/ml (C)
+0.1
-0.4
+0.4
+0.3
+0.1
carbon source
Wheat Arabinoxylan; filtered 1 mg/ml (C)
-0.1
+0.0
+0.1
-0.4
+0.9
carbon source
D-Raffinose 10 mM (C)
-0.1
+0.0
+0.2
-0.3
+0.8
carbon source complex media
R2A 1 x (C) complex media
+0.1
-0.0
+0.2
-0.3
+0.6
carbon source
amylopectin from maize 2.5 mg/ml (C)
+0.5
+0.2
+0.5
-0.5
-0.1
carbon source complex media
Columbia 1 x (C) complex media
+0.1
+0.0
+0.0
-0.3
+0.8
carbon source
Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
+0.6
-0.5
+0.3
+0.5
-0.2
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