Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2597 and Atu2598 are separated by 77 nucleotidesAtu2598 and Atu8181 are separated by 243 nucleotidesAtu8181 and Atu2600 are separated by 150 nucleotidesAtu2600 and Atu2601 are separated by 188 nucleotides Atu2597: Atu2597 - short-chain dehydrogenase, at 2,576,358 to 2,577,140 Atu2597 Atu2598: Atu2598 - transcriptional regulator, RpiR family, at 2,577,218 to 2,578,081 Atu2598 Atu8181: Atu8181 - hypothetical protein, at 2,578,325 to 2,578,810 Atu8181 Atu2600: Atu2600 - ABC transporter, nucleotide binding/ATPase protein (maltose/maltodextrin), at 2,578,961 to 2,580,073 Atu2600 Atu2601: Atu2601 - ABC transporter, substrate binding protein (maltose), at 2,580,262 to 2,581,494 Atu2601
Group Condition Atu2597 Atu2598 Atu8181 Atu2600 Atu2601
carbon source NAG (C) +0.7 +4.0 +1.4 -6.2 -7.4
carbon source NAG (C) +0.2 +3.4 +0.8 -5.1 -5.4
nitrogen source NAG (N) +0.2 +2.0 +0.7 -4.1 -4.4
nitrogen source NAG (N) +0.1 +1.8 +0.6 -4.1 -3.9
carbon source NAG (C) +0.3 +3.5 +1.1 -4.6 -5.6
carbon source NAG (C) +0.6 +4.2 +1.0 -5.6 -5.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.3 -0.7 -0.6 +0.1
nitrogen source Carnitine Hydrochloride (N) -0.1 -0.3 -0.7 +0.1 -0.3
phage phage 99.1 +0.2 -0.4 -0.6 -0.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 -0.4 -0.5 -0.5 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.3 -0.8 -0.4 +0.0 -0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.3 -1.7 +0.3 +0.1
stress R2A with Tetracycline 0.002 mM -0.4 -0.5 +0.3 -0.2 +0.4
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.5 -0.4 +0.6 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.6 +1.0 -0.1 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.8 +0.6 +0.1 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.6 -0.2 +0.8 -0.0
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.2 -0.2 -0.3 +0.7 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.4 +0.6 +0.2 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.0 -0.4 +0.6 +0.4 +0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.4 +0.9 +0.5 -0.0
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.4 +0.3 +0.5 -0.2
phage AgroPhage_C10 -0.0 -0.0 +1.2 +0.0 -0.3
phage AgroPhage_E10 -0.1 -0.3 +0.8 +0.5 +0.4
carbon source D-Glucosamine Hydrochloride (C) -0.0 +0.9 -0.0 +0.3 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.1 +0.1 +0.3 +0.6
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.2 +0.7 +0.4 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.2 +1.2 +0.2 +0.1
nitrogen source DL-2-Aminobutyric (N) +0.5 +0.0 -0.5 +1.7 -0.1
carbon source D-Glucosamine Hydrochloride (C) -0.1 +1.2 +0.1 +0.3 +0.4
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