Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2025 and Atu2026 are separated by 0 nucleotidesAtu2026 and Atu8169 are separated by 79 nucleotidesAtu8169 and Atu2028 overlap by 4 nucleotidesAtu2028 and Atu2029 are separated by 119 nucleotides Atu2025: Atu2025 - transcriptional regulator, at 1,986,648 to 1,987,343 Atu2025 Atu2026: Atu2026 - exodeoxyribonuclease V, at 1,987,344 to 1,988,471 Atu2026 Atu8169: Atu8169 - hypothetical protein, at 1,988,551 to 1,989,033 Atu8169 Atu2028: Atu2028 - transcriptional regulator, ArsR family, at 1,989,030 to 1,989,404 Atu2028 Atu2029: Atu2029 - hypothetical protein, at 1,989,524 to 1,989,904 Atu2029
Group Condition Atu2025 Atu2026 Atu8169 Atu2028 Atu2029
Atjh15 +0.1 +0.2 -0.1 -2.5 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.1 -0.6 -0.2 +0.0
phage AgroPhage_F10 -0.1 +0.2 -0.7 -1.5 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.7 -0.4 -1.1 +0.3 +0.1
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.7 +0.0 -1.2 +0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.5 +0.1 -1.1 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.4 -0.1 -1.4 +0.3
Atjh2 -0.1 -0.4 +0.3 -1.1 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 -0.9 -0.4 -0.6 -0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 -0.3 +0.6 -1.1 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.4 -0.3 -1.4 -0.3 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.7 -1.3 +0.9 +0.4
Atjh14 +0.6 +0.4 +0.2 -0.5 -1.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -0.2 -0.9 -0.2 +0.6
in planta Bethi_Library_OD0.01 +0.5 -0.4 -0.0 +0.5 -0.7
phage AgroPhage_A07 +0.6 +0.1 -0.7 +0.4 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.1 -0.0 -1.2 +1.0
stress Chloramphenicol 12.5 ug/mL +0.7 -0.4 -0.5 +0.9 -0.4
phage AgroPhage_E04 -0.3 -0.4 +0.3 +1.1 -0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.1 +1.1 -0.2 -0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.6 -0.4 -0.7 +1.0
in planta Bethi_Library_OD0.5 +0.5 -0.1 -0.5 +1.0 +0.2
phage AgroPhage_C10 -0.5 +0.4 +0.5 +0.6 +0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.5 +0.2 -0.7 +1.0
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.4 +1.0 +0.6 +0.0
nitrogen source DL-2-Aminobutyric (N) +1.1 -0.3 +0.6 +0.4 -0.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.0 -0.6 +0.5 +0.4 +0.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.4 -0.5 +1.4 +0.1
phage AgroPhage_D10 +0.7 -0.2 -0.3 +1.0 +0.7
phage AgroPhage_C04 +1.3 +0.5 -1.5 +1.1 +0.6
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