Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0653 and Atu0654 are separated by 40 nucleotidesAtu0654 and Atu8135 are separated by 202 nucleotidesAtu8135 and Atu0656 are separated by 172 nucleotidesAtu0656 and Atu0657 are separated by 118 nucleotides Atu0653: Atu0653 - hypothetical protein, at 645,744 to 648,182 Atu0653 Atu0654: Atu0654 - transcriptional regulator, LysR family, at 648,223 to 649,173 Atu0654 Atu8135: Atu8135 - hypothetical protein, at 649,376 to 649,669 Atu8135 Atu0656: Atu0656 - glutamate-cysteine ligase, at 649,842 to 651,215 Atu0656 Atu0657: Atu0657 - hypothetical protein, at 651,334 to 652,053 Atu0657
Group Condition Atu0653 Atu0654 Atu8135 Atu0656 Atu0657
nitrogen source L-Ornithine (N) -0.1 -2.8 -2.6 N.D. -0.1
nitrogen source L-Ornithine (N) +0.1 -2.6 -2.1 N.D. -0.1
nitrogen source L-Valine (N) -0.0 -0.2 -1.5 N.D. -0.3
nitrogen source L-Arginine (N) +0.0 -1.1 -0.8 N.D. +0.0
stress R2A with m-arsenite 0.8 mM +0.1 -0.8 -0.1 N.D. -1.0
nitrogen source L-Arginine (N) -0.0 -1.0 -0.8 N.D. +0.1
nitrogen source L-Valine (N) -0.1 +0.2 -1.4 N.D. -0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.8 -0.5 N.D. +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.8 -0.6 N.D. -0.0
nitrogen source DL-2-Aminobutyric (N) +0.1 -0.4 -0.5 N.D. -0.3
stress R2A with m-arsenite 0.8 mM +0.0 -0.3 +0.1 N.D. -0.9
nitrogen source L-Histidine (N) +0.4 -0.8 -0.4 N.D. -0.2
nitrogen source L-Histidine (N) +0.4 -0.7 -0.3 N.D. -0.2
nitrogen source L-Methionine (N) +0.1 -1.2 +0.4 N.D. -0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -1.2 +0.4 N.D. -0.2
stress R2A with Vancomycin 0.009 mM -0.5 -0.5 -0.6 N.D. +0.9
phage AgroPhage_D04 +0.5 -0.4 -0.1 N.D. -0.4
phage AgroPhage_B01 +0.6 -0.3 -0.3 N.D. -0.1
stress R2A with Vancomycin 0.009 mM -0.5 -0.0 +0.1 N.D. +0.7
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.4 +0.5 N.D. -0.3
phage AgroPhage_B07 +0.6 -0.1 +0.5 N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 +0.5 +0.6 N.D. -0.2
nitrogen source Hydantoin (N) -0.1 +0.7 +0.5 N.D. -0.2
nitrogen source 2,6-diaminopimelic (N) -0.1 -0.1 +1.6 N.D. -0.3
nitrogen source L-Phenylalanine (N) +0.1 -0.2 +1.6 N.D. -0.1
stress R2A with Cobalt chloride 0.02 mM +0.7 +0.1 +0.5 N.D. +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.9 +0.8 N.D. +0.0
nitrogen source Hydantoin (N) -0.0 +0.8 +1.2 N.D. -0.2
nitrogen source 2,6-diaminopimelic (N) -0.0 +0.1 +1.8 N.D. -0.1
nitrogen source L-Phenylalanine (N) +0.0 +0.1 +1.8 N.D. +0.0
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