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Cofit
Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu0485 and Atu0486 overlap by 1 nucleotides
Atu0486 and Atu8129 are separated by 36 nucleotides
Atu8129 and Atu0488 are separated by 1 nucleotides
Atu0488 and Atu0489 are separated by 274 nucleotides
Atu0485: Atu0485 - hypothetical protein, at 473,913 to 474,266
Atu0485
Atu0486: Atu0486 - dihydroorotate dehydrogenase, at 474,266 to 475,357
Atu0486
Atu8129: Atu8129 - hypothetical protein, at 475,394 to 475,891
Atu8129
Atu0488: Atu0488 - hypothetical protein, at 475,893 to 476,159
Atu0488
Atu0489: Atu0489 - methyltransferase, at 476,434 to 477,270
Atu0489
Group
Condition
Atu0485
Atu0486
Atu8129
Atu0488
Atu0489
carbon source
D-Fructose (C)
-0.0
-7.7
+0.2
-0.7
+0.0
carbon source
D-Glucose (C)
-0.1
-7.8
-0.0
-0.3
+0.1
carbon source
D-Quinic (C)
-0.2
-7.7
-0.1
-0.2
+0.1
carbon source
D-Glucose-6-Phosphate (C)
-0.2
-7.5
+0.1
-0.4
+0.0
carbon source
D-Fructose (C)
-0.3
-7.6
-0.3
+0.0
+0.2
carbon source
Cellotetraose (C)
-0.3
-7.6
-0.0
+0.2
-0.1
carbon source
Sucrose (C)
-0.2
-7.4
-0.0
+0.0
+0.0
carbon source
L-Sorbose (C)
-0.0
-7.6
+0.1
-0.3
+0.1
carbon source
Sucrose (C)
-0.0
-7.9
-0.0
+0.2
+0.1
carbon source
Cellotetraose (C)
+0.1
-7.6
+0.1
-0.1
+0.0
carbon source
L-Fucose (C)
-0.3
-6.8
-0.0
+0.0
-0.3
carbon source
Glutaric (C)
-0.2
-7.0
-0.3
+0.3
-0.2
carbon source
D-Trehalose (C)
-0.0
-6.8
+0.1
-0.5
-0.1
carbon source
Melibiose (C)
+0.2
-7.4
+0.1
-0.1
+0.0
carbon source
D-Leucrose (C)
-0.2
-7.0
-0.0
+0.1
-0.1
carbon source
m-Inositol (C)
-0.2
-7.5
+0.1
+0.2
+0.2
stress
R2A with Vancomycin 0.009 mM
-1.2
-5.0
-1.5
+0.7
-0.1
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.1
-6.7
-0.1
-0.5
+0.1
carbon source
D-Mannose (C)
+0.2
-6.7
+0.0
-0.2
-0.3
carbon source
NAG (C)
+0.0
-7.2
-0.0
+0.1
+0.1
carbon source
Lactulose (C)
-0.2
-7.0
+0.0
+0.1
+0.1
carbon source
Xylobiose (C)
+0.2
-7.3
-0.1
+0.3
-0.0
carbon source
D-Trehalose (C)
-0.2
-7.0
+0.0
+0.2
+0.1
carbon source
Maltotriose (C)
+0.1
-7.0
+0.1
-0.0
+0.0
carbon source
D-Mannitol (C)
+0.4
-6.9
-0.1
-0.2
+0.1
carbon source
D-Mannose (C)
+0.1
-6.6
-0.3
+0.2
+0.1
carbon source
D-Glucuronic gamma lactone (C)
+0.1
-7.0
-0.1
+0.4
+0.1
carbon source
gluconate (C)
+0.3
-6.7
-0.0
-0.2
+0.2
carbon source
Methyl alpha-D-glucopyranoside (C)
+0.1
-6.9
-0.0
+0.5
+0.1
carbon source
D-Maltose (C)
-0.3
-6.5
+0.2
+0.2
+0.2
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