Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu5070 and Atu5071 are separated by 195 nucleotidesAtu5071 and Atu8046 are separated by 77 nucleotidesAtu8046 and Atu5072 are separated by 121 nucleotidesAtu5072 and Atu5073 are separated by 3 nucleotides Atu5070: Atu5070 - ABC transporter membrane spanning protein (oligopeptide), at 68,922 to 69,836 Atu5070 Atu5071: Atu5071 - ABC transporter substrate binding protein (dipeptide), at 70,032 to 71,549 Atu5071 Atu8046: Atu8046 - hypothetical protein, at 71,627 to 71,779 Atu8046 Atu5072: Atu5072 - hypothetical protein, at 71,901 to 73,091 Atu5072 Atu5073: Atu5073 - pyridoxal phosphate biosynthesis protein, at 73,095 to 74,060 Atu5073
Group Condition Atu5070 Atu5071 Atu8046 Atu5072 Atu5073
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.0 -0.5 -0.6 -0.6
nitrogen source Carnitine Hydrochloride (N) -0.6 -0.3 -1.0 -0.1 -0.0
carbon source Dextrin from potato starch (C) -0.3 -0.0 -1.3 -0.5 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.2 -0.8 -0.2 -0.2
No phage control -0.2 +0.1 -1.6 +0.1 -0.1
carbon source Betanin (C) +0.0 -0.1 -0.3 -0.4 -0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.0 -0.6 -0.3 -0.6
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.1 -0.6 -0.3 -0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -0.2 -1.0 +0.1 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.2 -0.6 -0.3 -1.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.4 -0.6 -0.4 -0.9
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.1 +0.2 -1.0 -0.1 -0.4
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.1 -1.0 -0.1 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.0 -0.0 +0.5 -0.5 -0.9
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.1 -1.3 +0.1 +0.2
carbon source Betanin (C) -0.0 +0.2 +0.2 -0.4 -0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.0 +0.0 +0.5 -0.4 -0.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 -0.1 +0.5 -0.4 -0.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.3 +0.5 -0.1 -1.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 +0.5 -0.3 -0.7
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.1 -0.3 +0.6 -0.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.1 +0.8 -0.2 -0.6
stress Chloramphenicol 12.5 ug/mL +0.6 +0.0 -0.3 +0.4 -0.5
nitrogen source L-Isoleucine (N) -0.3 -0.3 +0.8 +0.1 +0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.2 +1.4 -0.2 -0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.3 +0.8 -0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 -0.1 +1.4 -0.2 +0.0
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.1 +1.3 +0.1 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +0.3 +0.5 +0.3 -0.2
nitrogen source DL-2-Aminobutyric (N) +0.2 +0.4 +0.2 +0.8 +0.1
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