Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu6188 and Atu6189 are separated by 115 nucleotidesAtu6189 and Atu6190 are separated by 13 nucleotidesAtu6190 and Atu6191 are separated by 66 nucleotidesAtu6191 and Atu6193 are separated by 1167 nucleotides Atu6188: Atu6188 - virA/G regulated protein, at 205,684 to 205,935 Atu6188 Atu6189: Atu6189 - protein secretion chaperone, at 206,051 to 206,242 Atu6189 Atu6190: Atu6190 - exported virulence protein, at 206,256 to 207,926 Atu6190 Atu6191: Atu6191 - virA/G regulated protein, at 207,993 to 210,047 Atu6191 Atu6193: Atu6193 - conserved hypothetical protein, at 211,215 to 211,946 Atu6193
Group Condition Atu6188 Atu6189 Atu6190 Atu6191 Atu6193
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -4.0 -0.2 +0.1 -0.1
phage AgroPhage_B07 -0.5 -3.4 -0.0 -0.0 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.0 -2.8 +0.1 -0.0 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.1 -2.4 +0.0 -0.1 -0.2
in planta Bethi_Library_OD0.5_6week +0.1 -2.9 -0.0 -0.0 +0.2
nitrogen source L-Serine (N) -0.0 -1.8 -0.2 -0.1 -0.6
nitrogen source Carnitine Hydrochloride (N) -0.2 -2.3 -0.0 +0.1 -0.1
lb_arabidopsis_leaf LB_arabidopsis_leaf -0.1 -1.9 -0.0 -0.2 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.0 -2.4 +0.1 -0.1 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -1.9 -0.1 -0.1 +0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -2.0 -0.2 -0.1 +0.2
stress R2A with Kanamycin sulfate 0.02 mM -0.2 -2.1 +0.1 -0.3 +0.1
lb_tomato_root LB_Tomato_root -0.2 -1.8 -0.0 -0.1 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.2 -1.9 +0.1 -0.0 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -1.9 -0.1 -0.1 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -2.5 +0.3 +0.1 -0.2
carbon source L-Alanine (C) -0.2 -2.0 -0.1 -0.1 +0.0
nophagecontrol No phage control -0.3 -1.7 -0.2 -0.1 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.2 -2.0 +0.1 -0.1 +0.1
no phage P3L5 -0.1 -2.0 -0.1 +0.0 +0.2
stress R2A with Azlocillin 0.2 mM +0.2 -1.7 -0.1 -0.2 -0.2
phage AgroPhage_D10 +0.2 -2.0 +0.1 +0.1 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.0 -2.0 +0.2 +0.1 +0.0
nitrogen source L-Glutamic (N) +0.1 -1.9 +0.2 +0.1 -0.0
carbon source Cellohexaose (C) +0.2 -1.7 -0.1 +0.1 +0.3
nitrogen source Ammonium chloride (N) -0.1 -1.7 +0.3 +0.1 +0.2
carbon source Dextrin from potato starch (C) +0.1 -1.6 -0.2 +0.1 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -1.2 +0.6 -0.3 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +1.6 -0.2 -0.1 -0.3
stress R2A with Tetracycline 0.002 mM -0.5 +1.2 +0.2 +0.1 +0.4
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