Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu6173 and Atu6174 overlap by 14 nucleotidesAtu6174 and Atu6175 overlap by 4 nucleotidesAtu6175 and Atu6176 overlap by 4 nucleotidesAtu6176 and Atu6177 are separated by 40 nucleotides Atu6173: Atu6173 - component of type IV secretion system, at 189,377 to 189,544 Atu6173 Atu6174: Atu6174 - component of type IV secretion system, at 189,531 to 190,244 Atu6174 Atu6175: Atu6175 - component of type IV secretion system, at 190,241 to 191,122 Atu6175 Atu6176: Atu6176 - component of type IV secretion system, at 191,119 to 192,252 Atu6176 Atu6177: Atu6177 - component of type IV secretion system, at 192,293 to 193,327 Atu6177
Group Condition Atu6173 Atu6174 Atu6175 Atu6176 Atu6177
phage AgroPhage_E04 -1.3 -0.3 -0.2 +0.1 -0.1
No phage control +0.6 +0.3 -0.5 +0.0 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.3 -0.0 +0.4 +0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.9 +0.3 +0.3 -0.1 -0.3
nitrogen source Putrescine (N) +0.8 -0.2 +0.2 +0.2 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.0 +0.3 +0.3 +0.4 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.4 +0.3 +0.3 +0.3 +0.3
no phage P4L5 +0.4 +0.5 +0.4 +0.2 +0.0
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.5 +0.4 +0.2 +0.3 +0.2
in planta Bethi_Library_OD0.1 +0.1 +0.5 +0.4 +0.3 +0.2
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.3 +0.3 +0.3 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.3 +0.5 +0.3 +0.5
in planta Bethi_Library_OD0.1 +0.4 +0.4 +0.4 +0.4 +0.2
in planta Bethi_Library_OD0.1 +0.6 +0.3 +0.4 +0.2 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.5 +0.4 +0.4 +0.3 +0.3
in planta Bethi_Library_OD0.05 +0.5 +0.4 +0.4 +0.5 +0.3
in planta Bethi_Library_OD0.5_6week +0.7 +0.4 +0.4 +0.4 +0.2
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.5 +0.5 +0.3 +0.3
in planta Bethi_Library_OD0.01 +0.3 +0.5 +0.5 +0.4 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.4 +0.5 +0.4 +0.5 +0.4
in planta Bethi_Library_OD0.01 +0.5 +0.4 +0.5 +0.4 +0.4
in planta Bethi_Library_OD0.05 +0.4 +0.5 +0.5 +0.4 +0.4
in planta Bethi_Library_OD0.05 +0.4 +0.6 +0.4 +0.5 +0.4
in planta Bethi_Library_OD0.05 +0.5 +0.5 +0.5 +0.6 +0.4
in planta Bethi_Library_OD0.05 +0.3 +0.6 +0.5 +0.6 +0.5
in planta Bethi_Library_OD0.01 +0.6 +0.6 +0.4 +0.5 +0.6
in planta Bethi_Library_OD0.01 +0.9 +0.6 +0.6 +0.6 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.9 +0.7 +0.5 +0.6 +0.5
in planta Bethi_Library_OD0.01 +0.8 +0.8 +0.6 +0.6 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.7 +0.9 +0.8 +0.8 +0.7
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