Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu6169 and Atu6170 overlap by 1 nucleotidesAtu6170 and Atu6171 are separated by 16 nucleotidesAtu6171 and Atu6172 are separated by 100 nucleotidesAtu6172 and Atu6173 are separated by 35 nucleotides Atu6169: Atu6169 - component of type IV secretion system, at 184,979 to 185,305 Atu6169 Atu6170: Atu6170 - component of type IV secretion system, at 185,305 to 187,674 Atu6170 Atu6171: Atu6171 - component of type IV secretion system, at 187,691 to 188,353 Atu6171 Atu6172: Atu6172 - component of type IV secretion system, at 188,454 to 189,341 Atu6172 Atu6173: Atu6173 - component of type IV secretion system, at 189,377 to 189,544 Atu6173
Group Condition Atu6169 Atu6170 Atu6171 Atu6172 Atu6173
phage AgroPhage_E04 -0.4 +0.1 +0.2 +0.3 -1.3
nitrogen source Putrescine (N) -0.4 -0.2 +0.2 -0.1 -0.6
nitrogen source L-Phenylalanine (N) -0.1 -0.0 +0.3 -0.3 -0.8
carbon source D-Saccharic potassium salt (C) -0.5 +0.2 +0.1 -0.4 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.1 +0.1 +0.2 -0.9
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.8 -0.0 -0.2 -0.2 +0.3
phage AgroPhage_F04 -0.1 +0.0 +0.3 +0.1 -1.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 -0.1 +0.2 -0.2 -0.5
nitrogen source 5-Aminolevulinic (N) +0.5 +0.0 +0.4 -0.3 -0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.1 -0.1 -0.2 +0.9
nitrogen source Putrescine (N) -0.4 -0.1 +0.2 +0.0 +0.8
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.1 -0.3 +0.0 +0.8
nitrogen source DL-2-Aminobutyric (N) +0.2 +0.2 -0.4 +0.4 +0.5
nitrogen source Nicotinamide (N) +0.5 +0.0 +0.6 -0.2 +0.3
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.4 +0.3 +0.2 -0.1
no phage P3L5 +0.4 +0.4 +0.6 +0.2 -0.1
no phage P1L4 +0.3 +0.4 +0.4 +0.1 +0.3
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.2 +0.2 +0.5 +0.1 +0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.8 +0.3 +0.6 +0.3 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.8 +0.4 -0.0 +0.1 +0.3
no phage P4L5 +0.3 +0.4 +0.5 +0.1 +0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.2 +0.3 +0.5 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.4 +0.3 +0.3 +0.3 +0.4
no phage P2L5 +0.6 +0.3 +0.7 +0.3 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.4 +0.5 +0.4 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.4 +0.4 +0.4 +0.5 +0.4
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.4 +0.7 +0.2 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.5 +0.4 +0.3 +0.5 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +1.0 +0.8 +0.8 +0.7 +0.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.9 +1.0 +0.9 +0.9 +0.7
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