Fitness for 5 genes in Agrobacterium fabrum C58

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Atu6160	Atu8063	Atu6162	Atu6163	Atu6164
nitrogen source	DL-2-Aminobutyric (N)	-0.5	-0.7	-0.6	+0.3	-0.1
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	-0.5	-0.9	-0.2	+0.0	+0.9
no phage	P2L5	-0.3	-0.8	+0.1	-0.4	+0.7
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.6	+0.6	+0.2	-0.7	-0.1
stress	R2A with Vancomycin 0.009 mM	-0.3	-0.6	-0.0	+1.0	-0.2
phage	AgroPhage_F10	-0.3	+0.6	+0.2	-0.7	+0.2
carbon source	Dextrin from potato starch (C)	+0.5	+0.8	+0.1	-0.8	-0.7
no phage	P5L5	-0.2	-0.5	+0.1	-0.2	+1.0
phage	AgroPhage_H04	+0.2	+0.8	+0.1	-0.9	+0.1
no phage	P1L4	-0.3	-0.2	+0.1	-0.1	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	+0.8	-0.1	-0.3	+0.6
in planta	Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days	+0.1	+0.7	+0.1	-0.5	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.9	-0.4	-0.1	+0.1	+0.4
in planta	Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days	+0.3	+0.6	+0.2	-0.4	+0.4
in planta	Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.3	+1.3	+0.2	-0.2	-0.0
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0	-0.2	-0.0	-0.2	+0.1	+1.4
in planta	Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days	+0.3	+0.9	+0.1	-0.4	+0.3
in planta	Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days	+0.4	+0.7	+0.2	-0.3	+0.3
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075	-0.1	+0.3	-0.0	-0.2	+1.3
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0	+0.2	-0.2	-0.1	-0.2	+1.6
in planta	Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.0	+1.7	+0.1	-0.2	-0.1
in planta	Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.0	+1.9	-0.3	+0.1	-0.3
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075	+0.1	-0.2	-0.1	-0.0	+1.7
nitrogen source	Hydantoin (N)	+0.2	+0.7	-0.2	+0.3	+0.4
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075	+0.3	+0.3	-0.0	+0.0	+1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	+1.9	+0.0	-0.2	-0.2
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075	-0.1	-0.1	-0.1	-0.0	+2.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+2.5	+0.1	-0.1	+0.3
in planta	Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	+0.5	+2.3	-0.2	-0.0	+0.1
in planta	Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.2	+2.8	-0.1	+0.1	+0.2