Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu6126 and Atu6127 are separated by 258 nucleotidesAtu6127 and Atu6128 overlap by 4 nucleotidesAtu6128 and Atu6129 are separated by 88 nucleotidesAtu6129 and Atu6130 are separated by 13 nucleotides Atu6126: Atu6126 - conjugal transfer protein, Dtr system, at 143,432 to 143,728 Atu6126 Atu6127: Atu6127 - OriT nicking enzyme, Dtr system, at 143,987 to 147,289 Atu6127 Atu6128: Atu6128 - Conjugative pilin processing protease, at 147,286 to 147,816 Atu6128 Atu6129: Atu6129 - conjugal transfer protein, at 147,905 to 149,002 Atu6129 Atu6130: Atu6130 - conserved hypothetical protein, at 149,016 to 149,645 Atu6130
Group Condition Atu6126 Atu6127 Atu6128 Atu6129 Atu6130
carbon source D-Sorbitol (C) -0.5 -0.1 -0.7 -0.2 -0.4
nitrogen source L-Leucine (N) -0.5 +0.0 -0.2 -0.3 -0.2
nitrogen source DL-2-Aminobutyric (N) -0.6 -0.1 -0.2 +0.3 -0.5
carbon source Ribitol (C) -0.1 -0.2 -0.4 -0.4 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.0 -0.2 -0.0 -0.7
nitrogen source Orotic (N) +0.2 +0.0 -0.7 -0.2 -0.2
nitrogen source Urea (N) -0.1 -0.0 -0.7 -0.2 +0.3
nitrogen source NAG (N) +0.3 -0.1 -0.4 -0.2 -0.2
carbon source Cellohexaose (C) +0.1 -0.3 -0.3 -0.3 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.0 -0.5 -0.4 +0.2
phage phage 99.2 -0.3 +0.1 -0.5 -0.2 +0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X +0.2 -0.0 +0.3 -0.7 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.1 +0.2 +0.2 -0.5
nitrogen source L-Valine (N) +0.0 -0.0 -0.4 -0.2 +0.7
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.0 +0.6 +0.2 -0.6
phage AgroPhage_F10 +0.1 +0.2 -0.3 -0.3 +0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.1 +0.4 +0.3 -0.1
nitrogen source Urea (N) +0.4 -0.0 -0.2 -0.4 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.0 +0.5 +0.4 -0.3
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.0 -0.1 +0.5 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 -0.5 +0.4 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 +0.0 -0.2 +0.5 +0.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 +0.1 -0.3 +0.1 +0.2
phage AgroPhage_E10 +0.2 +0.1 -0.1 -0.2 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -0.2 +0.1 +0.5 +0.6
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -0.1 +0.2 +0.8 +0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 +0.2 +0.4 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.1 +0.5 +0.3 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.1 +0.2 +0.1 +0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.4 +0.1 +0.4 +0.3
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