Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu6097 and Atu6098 overlap by 4 nucleotidesAtu6098 and Atu6099 are separated by 380 nucleotidesAtu6099 and Atu6100 are separated by 11 nucleotidesAtu6100 and Atu6101 are separated by 128 nucleotides Atu6097: Atu6097 - cell filamentation protein, at 117,878 to 118,474 Atu6097 Atu6098: Atu6098 - transcriptional regulator, HTH family, at 118,471 to 118,932 Atu6098 Atu6099: Atu6099 - conserved hypothetical protein, at 119,313 to 119,915 Atu6099 Atu6100: Atu6100 - conserved hypothetical protein, at 119,927 to 120,328 Atu6100 Atu6101: Atu6101 - helicase, SNF2 family, at 120,457 to 125,538 Atu6101
Group Condition Atu6097 Atu6098 Atu6099 Atu6100 Atu6101
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -0.2 N.D. -0.3 -0.6 -0.2
carbon source D-Trehalose (C) -0.4 N.D. -0.4 -0.4 -0.0
nitrogen source Hydantoin (N) -0.4 N.D. -0.4 -0.4 -0.0
nitrogen source D-Glucosamine Hydrochloride (N) -0.2 N.D. -0.4 -0.4 -0.1
carbon source gluconate (C) -0.3 N.D. -0.1 -0.5 -0.2
nitrogen source Ammonium chloride (N) -0.0 N.D. -0.3 -0.5 -0.2
nitrogen source DL-2-Aminobutyric (N) -0.4 N.D. -0.5 -0.3 +0.1
nitrogen source Putrescine (N) -0.2 N.D. +0.2 -0.6 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 N.D. -0.2 -0.0 +0.1
nitrogen source Nicotinamide (N) +0.2 N.D. -0.2 -0.4 -0.2
nitrogen source L-Methionine (N) -0.5 N.D. -0.1 +0.2 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.2 N.D. -0.5 -0.4 +0.1
carbon source Betanin (C) -0.5 N.D. -0.1 +0.2 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 N.D. +0.1 -0.7 -0.1
carbon source Dextrin from potato starch (C) +0.2 N.D. -0.8 +0.1 +0.2
carbon source Dextrin from potato starch (C) -0.4 N.D. -0.1 +0.4 -0.2
No phage control -0.3 N.D. +0.2 +0.7 -0.0
nitrogen source spermidine (N) +0.5 N.D. +0.2 -0.2 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 N.D. -0.1 +0.4 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 N.D. +0.7 -0.1 -0.0
Atjh14 -0.1 N.D. +0.2 +0.6 +0.2
stress R2A with Vancomycin 0.009 mM +0.2 N.D. +0.4 +0.4 -0.1
stress R2A with Carbenicillin 150 mM +0.6 N.D. +0.1 +0.3 -0.0
phage phage 99.2 +0.2 N.D. +0.3 +0.5 -0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 N.D. +0.4 +0.4 -0.0
carbon source Methyl alpha-D-glucopyranoside (C) +0.3 N.D. +0.1 +0.3 +0.2
Atjh15 +0.4 N.D. +0.1 +0.4 +0.1
Atjh2 +0.2 N.D. +0.2 +0.4 +0.3
phage phage 100.3 +0.5 N.D. +0.2 +0.6 -0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 N.D. +0.2 +0.9 +0.3
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