Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu6085 and Atu6086 are separated by 18 nucleotidesAtu6086 and Atu6087 are separated by 48 nucleotidesAtu6087 and Atu6088 overlap by 4 nucleotidesAtu6088 and Atu6089 are separated by 31 nucleotides Atu6085: Atu6085 - ABC transporter, substrate binding protein (nitrate/sulfonate), at 103,100 to 104,032 Atu6085 Atu6086: Atu6086 - ABC transporter, membrane spanning protein (nitrate/sulfonate), at 104,051 to 104,851 Atu6086 Atu6087: Atu6087 - ABC transporter, nucleotide binding/ATPase protein (nitrate/sulfonate), at 104,900 to 105,679 Atu6087 Atu6088: Atu6088 - transcriptional regulator, LysR family, at 105,676 to 106,623 Atu6088 Atu6089: Atu6089 - conserved hypothetical protein, at 106,655 to 107,842 Atu6089
Group Condition Atu6085 Atu6086 Atu6087 Atu6088 Atu6089
carbon source D-Sorbitol (C) +0.2 -0.8 -0.4 -0.1 -0.3
carbon source Dextrin from potato starch (C) -0.1 -0.2 +0.2 -0.5 -0.4
nitrogen source spermidine (N) -0.2 -0.3 +0.1 -0.3 -0.1
nitrogen source Hydantoin (N) +0.3 -0.4 +0.1 -0.3 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 +0.1 -0.3 +0.2
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -0.1 +0.3 -0.2 -0.1 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.4 +0.2 -0.1 -0.1
nitrogen source L-Methionine (N) +0.4 -0.2 -0.1 -0.3 -0.0
nitrogen source Hydantoin (N) +0.2 -0.2 +0.2 -0.3 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.3 +0.2 -0.3 -0.1
carbon source Cellohexaose (C) +0.0 +0.4 -0.1 -0.2 -0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.0 -0.0 +0.5 -0.3
nitrogen source L-Valine (N) +0.3 +0.4 +0.0 -0.1 -0.2
carbon source Rhamnogalacturonan - from potato (C) +0.0 +0.4 +0.3 -0.2 +0.1
stress R2A with Tetracycline 0.002 mM +0.1 +0.4 +0.1 +0.3 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.1 +0.3 +0.2 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 -0.1 +0.2 +0.2 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.7 -0.2 -0.1 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.1 +0.3 +0.4 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.1 +0.3 +0.1 +0.3 +0.2
nitrogen source 5-Aminolevulinic (N) +0.1 +0.5 +0.2 -0.0 +0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 +0.4 -0.1 +0.3
lb_arabidopsis_leaf LB_arabidopsis_leaf +0.2 +0.1 +0.1 +0.3 +0.2
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +0.2 +0.2 +0.3 +0.3
lb_sorghum_leaf LB_sorghum_leaf +0.2 +0.2 +0.2 +0.2 +0.1
Atjh2 +0.3 +0.3 -0.1 +0.2 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 +0.1 +0.4 +0.3 +0.2
nitrogen source Putrescine (N) +0.4 +0.4 +0.3 +0.1 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 +0.1 +0.4 +0.1 +0.6 +0.1
No phage control +0.1 +0.6 +0.1 +0.4 +0.4
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