Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu6072 and Atu6073 are separated by 88 nucleotidesAtu6073 and Atu6074 are separated by 57 nucleotidesAtu6074 and Atu6075 overlap by 1 nucleotidesAtu6075 and Atu6076 overlap by 1 nucleotides Atu6072: Atu6072 - thermophilic desulfurizing enzyme, at 85,254 to 86,468 Atu6072 Atu6073: Atu6073 - ABC transporter, substrate binding protein (peptide), at 86,557 to 88,152 Atu6073 Atu6074: Atu6074 - ABC transporter, nucleotide binding/ATPase protein (peptide), at 88,210 to 89,877 Atu6074 Atu6075: Atu6075 - ABC transporter, membrane spanning protein (peptide), at 89,877 to 90,818 Atu6075 Atu6076: Atu6076 - ABC transporter, membrane spanning protein (peptide), at 90,818 to 91,819 Atu6076
Group Condition Atu6072 Atu6073 Atu6074 Atu6075 Atu6076
carbon source Rhamnogalacturonan - from potato (C) -0.5 -0.4 -0.1 -0.4 -0.2
carbon source gluconate (C) -0.2 -0.3 -0.3 -0.4 -0.2
nitrogen source 5-Aminolevulinic (N) -0.6 +0.0 -0.3 -0.4 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.2 -0.4 -0.1 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.1 -0.4 +0.2 -0.3
nitrogen source spermidine (N) -0.6 -0.1 +0.1 -0.3 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.7 -0.1 -0.1 -0.2 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.0 +0.1 -0.1 -0.4
nitrogen source Ammonium chloride (N) -0.5 +0.1 -0.1 -0.4 +0.1
nitrogen source 6-aminocaproic (N) -0.6 -0.3 +0.0 -0.1 +0.1
carbon source D-Saccharic potassium salt (C) +0.3 -0.0 -0.4 -0.3 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.5 +0.1 -0.3 +0.2 -0.1
nitrogen source L-Aspartic Acid (N) -0.5 -0.1 +0.1 +0.2 -0.1
carbon source L-Galactose (C) -0.5 -0.1 -0.0 +0.1 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.3 -0.0 +0.2 +0.1
nitrogen source Urea (N) +0.3 -0.0 -0.4 -0.2 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.0 -0.1 +0.2 +0.5
Atjh14 -0.3 +0.1 +0.3 +0.3 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.0 +0.2 -0.2 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.3 +0.2 -0.0 -0.3 -0.2
nitrogen source nitrate (N) -0.4 +0.2 -0.1 +0.3 +0.1
nitrogen source Putrescine (N) +0.6 +0.0 -0.3 +0.2 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.1 -0.0 +0.2 +0.5
Atjh15 -0.3 +0.2 +0.1 +0.3 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +0.2 -0.1 +0.1 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.4 +0.1 +0.4 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.2 +0.3 +0.3 +0.2
carbon source methyl-beta-D-xylopyranoside (C) +0.4 +0.2 +0.1 +0.2 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.2 +0.1 +0.3 +0.1
nitrogen source DL-2-Aminobutyric (N) +0.5 +0.5 -0.2 +0.2 +0.1
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